KEGG   Vitis vinifera (wine grape): 100250474
Entry
100250474         CDS       T01084                                 
Name
(RefSeq) THO complex subunit 1 isoform X1
  KO
K12878  THO complex subunit 1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03013  Nucleocytoplasmic transport
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100250474
  09122 Translation
   03013 Nucleocytoplasmic transport
    100250474
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100250474
   03041 Spliceosome [BR:vvi03041]
    100250474
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100250474
Spliceosome [BR:vvi03041]
 Complex C
  Other components
   EJC/TREX
    100250474
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100250474
SSDB
Motif
Pfam: efThoc1 HSM3_N Herpes_UL92
Other DBs
NCBI-GeneID: 100250474
NCBI-ProteinID: XP_010659077
LinkDB
Position
13:complement(join(22112665..22112904,22113913..22114062,22114150..22114209,22124118..22124168,22124348..22124419,22128702..22128768,22130671..22130753,22130879..22130995,22149959..22150000,22152020..22152085,22152219..22152344,22152457..22152528,22170879..22170925,22171053..22171118,22171285..22171357,22182699..22182770,22182874..22183019,22187163..22187256,22211638..22211712,22212515..22212598,22212789..22212791))
AA seq 601 aa
MEIFKQALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQS
GEKIMHYGQSIDDEEAIQSQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKD
IFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDAPEGISIDFNFYKTFWSLQEHFCNPASISLAPTKWQKFT
SNLMVVLNTFEAQPLSDEEGNANNLEEEAATFSIKYLTSSKLMGLELKDPSFRRHILVQC
LILFDYLKAPGKNDKDLPSDSMKEEIKSCEERVKKLLETTPPKGKEFLHNIEHILEREKN
WVWWKRDGCPPFERQPIEKKAVQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRV
RTPAVSEYWKPLAEDMDSSAGIEAEYHHKNNRVYCWKGLRFAARQDLDGFSRFTEYGIEG
VVPMELLPSDVRSKYQAKPSDRSKRAKKEETKGAAQQAEENQIATPASEIDGEGTRVDLE
ASAAPMDTDVTATTPTADENQKQSSDTDAGQEAGQSEADAEAEAGMIDGETDAEVDLDAV
G
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggaaatattcaagcaggccttactgaaacctgggccaccggaaagttttgctctccag
gtagtgcaagaggccataaaacctcagaagcaaacaaaactagctcaagatgagaatcaa
ttgttagaaaatattcttcggaaattacttcaggaactggtgtcatgtgccgttcaatca
ggggagaaaattatgcattatgggcaatcaattgatgatgaggaagcaatccagagtcaa
attccacgccttttggacattgtgctgtatctttgtgagaaagaacatgttgagggtggt
atgatattccagctattggaagatttaacagaaatgtctacaatgagaaactgtaaagac
atcttcgcttatattgagagtaaacaagatatattggggaagcaagagctctttgcacgt
ggaaagcttgtgatgctgaggacgtgcaatcaacttcttcgtcgtctgtcaaaggcaaac
gatgtggttttttgtggacgaattctcatgtttctggctcatttctttcccttgtccgag
cgttcagctgtgaatataaagggggttttcaacacatctaatgaaacaaaatatgagaaa
gatgcccctgaaggaatttctattgatttcaacttttacaagactttttggagtttacag
gaacacttttgcaatcctgcttctatatctcttgctcctaccaagtggcagaaatttaca
tccaatttaatggttgtgttgaatacctttgaagctcagcctttgagtgatgaagagggt
aatgctaataatctggaggaagaggcagcaactttcagcataaaatatcttacaagcagt
aaactaatgggtttagagttgaaagacccaagttttcgacgccatattcttgttcaatgc
ctcatattgtttgattatctgaaggcccctggaaagaatgacaaagacttgccatccgat
agtatgaaagaagagataaaatcttgtgaagagcgtgtgaagaaactgcttgagacgacc
ccaccgaaagggaaagagtttcttcataacattgagcatatactagaacgtgaaaagaat
tgggtatggtggaaacgtgatggttgcccaccatttgaaagacagccaatagagaagaaa
gctgttcaagatggtgccaaaaaacgtaggccaaggtggagaatgggaaataaagaactc
tctcagttgtggaagtgggcagatcaaaacccaaatgctcttactgatccacagcgtgtc
cgcactcccgctgtctcagagtattggaaacccttggctgaagatatggactcatccgct
ggaattgaagctgaatatcaccataaaaataaccgggtttattgctggaaaggtcttcga
tttgcagctcggcaggacttggatggattttctagatttactgagtatggaattgaaggg
gttgtgcctatggaacttttgccttcagatgtccggtccaaatatcaagctaaaccaagt
gacaggtctaaacgtgctaaaaaagaagaaacaaaaggtgctgcacaacaagcagaggaa
aaccagatcgcaacacctgcaagtgagattgatggggagggaaccagagttgatcttgaa
gcctcagcggcaccaatggacactgatgtcacagccacaactccaacagcagatgaaaat
cagaagcaaagctctgacaccgatgcaggtcaggaggcagggcagtcagaagcagatgct
gaagcagaggctggaatgatagatggggagacagatgcagaggttgatttagatgcagtt
ggctga

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