Vitis vinifera (wine grape): 100253554
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Entry
100253554 CDS
T01084
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03022
Basal transcription factors
vvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100253554
09124 Replication and repair
03420 Nucleotide excision repair
100253554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100253554
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100253554
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100253554
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100253554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
Motif
Other DBs
NCBI-GeneID:
100253554
NCBI-ProteinID:
XP_002284994
UniProt:
F6GTZ1
LinkDB
All DBs
Position
6:join(3983477..3983791,3984637..3985098,3985639..3986014,3988227..3988375)
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AA seq
433 aa
AA seq
DB search
MNDMEHRKTNDGEGRRLDGEEEEEEEDEDEGNGRGLDAWERAYADERSWESLQEDESGLL
RPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSRAASEMDFKPSRMAVV
AKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLGGSPDSHVKALMGKLECSGDSSLQ
NALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIMETIQECKKSKIRCSVIGLSAEIF
ICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGVISI
CSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFDEVSL
SLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHESLHNCPGCE
SFRHSKIVSVTEE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacatggaacaccggaagaccaacgatggagaaggaagaagattggatggagaa
gaagaggaggaggaggaagatgaagatgagggaaatggaagaggccttgatgcatgggag
agagcttatgctgatgagagatcatgggagtctctgcaagaggatgagtctggacttctt
cgccccattgacaacaaaaccatttaccacgctcagtatcgaaggcgcattcgctcccta
tattcctccacaaccactgctcgaattcaaaagggtctcattcgctatctctacattgtt
gttgatctctccagggcagcttcagagatggattttaaacctagccgaatggctgtagtt
gcaaaacatattgaggctttcattagggagttctttgaccagaatccacttagtcaaatt
ggtctggtgaccataaaggatgggttggctcagtgcttaacagatcttggtggcagtcct
gattcccatgttaaagctttgatgggtaagttggagtgctctggtgattcctccctacag
aatgccctagatctggttcatgggtatctaaatcaaatcccatcatatggtcatcgtgaa
gttctgatcttatattcagctctcagtacttgcgacccaggagatataatggagaccatc
caggaatgcaagaaatctaaaatacgctgttcagttatcggcctttctgcagaaattttt
atatgtagacatctctgccaagagactggtggatcatactctgttgcattggatgagtcc
cactttaaagagttgctactagagcatgcacccccgccaccagcaatagcagaatttgca
attgctaatttgatcaagatgggtttccctcaaagagcagcagagggtgttatttcaata
tgttcatgccataaagaggctaaagttggtgggggctacacttgtccaagatgcaaagca
cgtgtgtgtgaactgcctacagaatgtcgtatttgtgggctgacactagtttcttctcct
catttggcaaggtcatatcaccatctcttcccaataccaccttttgatgaggtgtctctc
tcacttttaaataatccacatcaaaggtcttctagagcttgttttggttgccaagaaagt
cttctgatccctggaaacaaacctactctttgtgttgcttgcccaaaatgcaaacagcac
ttctgccttgattgtgacatttatattcacgagagcctacacaactgtccgggttgtgag
agcttcaggcattctaagatagtaagtgttactgaggaatga
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