KEGG   Vitis vinifera (wine grape): 100258105
Entry
100258105         CDS       T01084                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    100258105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100258105
Enzymes [BR:vvi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100258105
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     100258105
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 PTCB-BRCT DNA_ligase_A_C BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 100258105
NCBI-ProteinID: XP_002263967
LinkDB
Position
11:join(17213623..17213955,17215574..17215665,17216589..17216674,17216744..17216880,17220351..17220425,17220673..17220764,17221939..17222010,17239807..17239886,17239990..17240027,17240116..17240122,17240436..17240591,17243258..17243333,17251334..17251458,17251556..17251590,17251687..17251745,17257426..17257509,17257943..17258038,17258138..17258186,17258349..17258436,17258639..17258842,17259483..17259608,17259805..17259904,17260002..17260107,17260349..17260479,17260611..17260772,17262293..17262448,17263571..17264294)
AA seq 1162 aa
MCEETKFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGS
YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMT
SGGLTIKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWK
KLHGKEVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILD
GEMLVWDISLNRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYVGDTSVIHQTLKERH
ELLQKVVKPLKGRFEILVPSGGLNTHRPSGEPCWSLIAYDVDDVERFFKKTVENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPEYVHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADHS
GPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNEYPKKAPPSFYQVTNNSKERPD
IWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDCVRYDKPWHECLDVQSFMELVH
SSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHFMQTDVTNVKGETLIFSNMM
FYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQSKGIKYQAAKLRGDIIHCS
WVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSYYQDLDISDIKQLLSNVDRS
DNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWELLSKLALRRMKLEVSMGGG
KVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGR
RLQEQKYSLKPEGLEESNFGECKHDIDVEAPSVLDSVENQNLVSFPDKEGKQGRGKAPPE
SISILASPKRDEKRKRGRPAGPSTKKGKAGFSQARRTRPRIGKPPKIYENESDASDSGEK
MEEEGTKMGGNHAIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRA
QDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVEQG
AEPVKKKKVSYKDVAGALLKDW
NT seq 3489 nt   +upstreamnt  +downstreamnt
atgtgcgaagaaaccaagttcagtgttctgtgcagcctcttcacatggattcagaggagc
agaacctccgccaagaagcgttccaagttccgcatattcctcgacaccttttgcataaac
ggccaccagttcagcgccatacgattgatcctccccaacctcgaccgcgagaggggctcc
tacggactcaaggagtccgtgctcgccacttgcctcattgacgccctcggcatgtccagg
gagtccgaggacgcccttcgcctcatcaactggcgaaaagggggtgctaaaaccggcgcc
aatgctggaaattttgccatggtcgcggctgaagtgctgcagcgtcggcaaggaatgact
tctggtggactgacaatcaaggagttgaatgatttgcttgattgtttagcttcaagtgaa
aatagaacagagaagacttcagtcctttctaccctgatcaagaaaacaaacgcacaggaa
atgaagtggattgtcatgataattctgaaagacctgaagttgggaatcagtgaaaaaagc
atcttccatgaattccatccggatgcagaggacttgtttaatgtcacatgcgacttgaaa
cttgtttgtgaaaagctcaaggatcgaagtcaaaggcataaacgccaggatattgaagtt
ggaaaagctgtgcgaccccaactagctatgagggttgctgatgcaactgcagcatggaag
aagcttcatgggaaggaagtggttgttgagtgcaagtttgatggtgaccgcatccaaatt
cataagaatggagaagaaatacacttcttctcaaggaacttccttgatcaccctgaatat
aaatatgcaatgtcaaacattgttgcacaaaatcttttggttgataggtgtatacttgat
ggtgaaatgttggtatgggacatatcgctgaatcgttttgctgagtttggttcaaatcag
gaaatagcaaaggcagcaaaggaggggcttgacagtgatcggcagttgtgctatgttgct
ttcgacattctttatgttggagatactagtgtcattcaccaaaccttgaaggaacggcat
gagcttttgcagaaagtcgtgaagcctttgaagggtcgttttgaaatcttagtaccttct
ggtggtcttaatactcaccgtccttctggggaaccatgttggtcacttattgcttatgat
gtggatgatgtcgagaggttcttcaagaaaactgttgaaaatagagatgaaggcattgtt
ttaaaagaccttggttcaaaatgggagccaagtgacaggagtggaaagtggttaaagttg
aagcctgagtatgttcatgcaggttctgaccttgatgttcttataataggagggtattat
ggttctgggcgtcgtggaggagaggtagctcaattcttggtgggccttgctgaccattca
ggccctgacacatatcccagacgattcatttccttttgcagagtgggtactggactttct
gatgacgagcttgatgctgttgtaacaaaattgaagccttatttcaggaaaaatgaatac
ccaaaaaaggcaccaccaagcttttatcaagtcacaaataattcaaaagagagaccagac
atttggattgatagccctgaaaaatcaattatactttctattactagtgatatccgaaca
ataaggtctgaggtatttgctgcaccatacagcctgaggttcccacgcattgattgtgtg
agatatgacaagccttggcatgaatgccttgatgtgcaatcttttatggaattggtacat
tcaagcaatggtaccacgcagagaggggcagattatgggcgcatgcaagatagtaaacca
aagcgcatgaaatcctctaagaaaggagagcaaaagactgctcatgttgttccttctcat
tttatgcagactgatgttaccaatgtcaagggcgaaacgctaatattttcgaacatgatg
ttttactttgttaatacacctccaacccattctcttgattccttgcataaattggtggtt
gagaatggaggaaccttctcaatgaatctgaataattcagttacacattgtgttgcagct
caaagtaaaggtatcaaatatcaggcagcaaagcttcgtggagatattattcattgttct
tgggtctttgactgttgttcacagaaaaagctccttcctttacagccaaagtactttctc
ttcctttctgaacattcaaagaagaagttacaagaggaaattgacaaattttctgactcc
tactaccaggatcttgacatttcagacatcaagcagcttttaagcaatgtggataggtca
gacaactccaaaactattgattactacaagaacaaatattgtccaaaggaaaagtggtcg
cgctttcatgattgctgcatttgcttccactcctcaatacagtcttctaattcggattgg
gaacttctgtcaaaacttgcgctgaggaggatgaagcttgaagtttccatgggtggtggt
aaagttggcaataatctttctcaggccacccatttagtggtcttttcagtaccaggattt
gatttggacttcagtgacataatggaaagtttctcaccagcagagaaacatcttctatgt
aataaaaagttgcatgttgttgggtatcaatggttagaaggctgcttggaggagggccgg
aggttgcaagaacagaaatatagcctgaaacctgagggcttggaagagtcaaactttgga
gaatgcaaacatgatatagatgtagaagccccttctgttttggacagtgtggagaaccaa
aatttggtgtcttttccagacaaagaagggaaacaaggtagaggaaaagctcctccagaa
agcattagtatcttggcctcgcccaagagggacgagaaaaggaaaagaggaaggcctgct
ggcccaagcacaaagaaaggaaaagcaggtttcagccaagctcgaaggacacggccccgg
attggtaagccacctaagatatatgaaaacgaatcagatgcaagcgattcaggtgaaaaa
atggaagaggaagggaccaaaatgggagggaatcatgcaatccatggagtcgaatgcaag
gaatgtccagaaatccaagagactgaaatagtagaagattctgaatcatcacaaagagga
aagacagaagaaaaggaggttgcactagataatgtacgtgaaaaatggttagatagagca
caggacattgaactggatagtgaaaataaggttgacaacagtaaaaagactgagaagctg
gaagttatggttgatccagttcaagccatgctactagacatgataccgagccttggagtg
aaaaaggcggaaagtacaaatcctattattgatgatgagaagcctccagtagagcagggt
gcagaacctgtgaagaaaaagaaagtcagctacaaggatgtcgctggagcactgctgaag
gattggtga

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