KEGG   Vitis vinifera (wine grape): 100258601
Entry
100258601         CDS       T01084                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03022  Basal transcription factors
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100258601
  09124 Replication and repair
   03420 Nucleotide excision repair
    100258601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100258601
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100258601
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100258601
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100258601
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 MetRS-N
Other DBs
NCBI-GeneID: 100258601
NCBI-ProteinID: XP_059596119
LinkDB
Position
10:complement(join(5993485..5993619,5993711..5993785,5994023..5994103,5995102..5995192,5995791..5995876,5996170..5996253,5996463..5996546,5996884..5996952,5998473..5998532,5998973..5999018,5999137..5999237,5999428..5999521,5999849..5999917,6000461..6000628,6001120..6001232))
AA seq 451 aa
MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYIDVPVTA
KAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVL
PREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSMMKVFQRGLLT
QREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGE
AYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFVV
VETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFL
QQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREY
GGLLWEDSKKMRLVVKAEIHLHMREYLRRPK
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgccgcaggtgaaaataatcgccaagaattttatggacatggtggcatctttgcctgcc
atgaagctcgacgccctctaccacaatactttcatttgcgaagccattctcaggtctttg
ccacctctagccaagaagtatatattacaaatgttatacattgatgttccggtaacagcc
aaggcaatggaggagtgggtgctggcagatgggttttctaagcatagagtagccattgat
cgattgatccagttaagagtatttactgaaacttcggacaggaaaaaggaaacctcttat
agattaaatccaacgtttcagacaaatcttcaaaagcatttgatatatggcggggtttta
ccaagggaaccaatgccttcaaatatcactgtgaggctcccaagcttggatgatctagaa
gcctatgcccttggacaatgggagtgtttcttgctgcaacttataagctccactcaaact
gaaaaactcacgaatttcagctcttctatgatgaaagttttccagcgtggtcttctgact
caaagagaaaaagaagctccacggttaactgagagtggtttccagttcttgcttatggat
acaaatgcacaactttggtacatcatgagggaatatatctctaattctgaggagcggggt
gtggacccagcagatttgatttcatttctgctagagctcagttttcatgttacaggagag
gcatataatataaacacattgactgagttccagagaaatacaatcaaggacctggtagac
ttgggattggtcaaacttcagcagggcagaaaagagagttggtttattcctactaaatta
gctaccaatctgtcaatgagcttatcagatacatcatcgcggaaacagggatttgtggtt
gtggaaacaaactttaggttgtatgcttattcatcatctaagttgcattgtgagatttta
cggctgttctcaagggtagagtatcaacttccaaatcttatagttggtgcaataaccaaa
gaaagcttgtataatgcttttgaaaatggcattacggcagagcagataatttcttttctt
cagcaaaatgcacatccccgtgttgcagaaagaacaccagctgtccctgaaaatgtcaca
gatcagattaggctgtgggagacagatctgaacagggttgagacgatgccttcacatctt
tatgatgaattcccttctagggatgtctttgaggcagcttgtgattttgcgagggaatac
ggtgggctgttatgggaggattcaaaaaagatgcgtctggtagtgaaggcagagatacat
ttgcatatgcgtgagtatcttcgccgcccaaagtag

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