Vitis vinifera (wine grape): 100262258
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Entry
100262258 CDS
T01084
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100262258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100262258
Enzymes [BR:
vvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100262258
Spliceosome [BR:
vvi03041
]
Complex A
U2 snRNP components
U2 related factors
100262258
Complex B
100262258
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
100262258
NCBI-ProteinID:
XP_002280049
UniProt:
F6I0P5
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All DBs
Position
3:2966244..2969687
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AA seq
1147 aa
AA seq
DB search
MEKSRREDSDLKKSHRDRDRNGERHRERERDKEKKEHRESRRSEREKSSDDKHREKERDK
HRDKRDKERTRSSRDDERDRARERTKDREKERDRDHEGRDAEREKERERDKESRERAREK
EREDREREREREKEREREKAREREREKEREREKEREREREREREKRDREREDREREKERD
RERLREREKRREPDRNDSSDGDDVRDRDRKRRRRDDDYKDRERDRSGRSNRHRDEGEDSP
RKKSDDDDLDKKERRTREEDLEEEQRKLDEEMEKRRRRVQEWQELKRKREESEREKLGEA
ANADEPKSGKTWTLEGESDDEDVAPTGNSETDLNMDEDAKPTDNEVGDGMAIDSQNGTSA
STLQNGDEGADGDEEIDPLDAFMNSMVLPEVEKLNNAAVSPTSNAVVPSEDSDSDYGDLE
NNEDPLEEEDDDEFMKRVKKTKAERLSIVDHSKIDYKPFRKNFYIEVKESARMTPEEIAA
YRKQLELKIHGKDVPKPVKTWHQTGLTTKILDTIKKLNYERPMPIQAQALPIIMSGRDCI
GIAKTGSGKTLAFVLPMLRHIKDQPPVMPGDGPIGLIMAPTRELVQQIHSDIKKFAKVVG
ISCVPVYGGSGVAQQISELKRGAEVVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR
MFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARRVLNKPVEIQVGGRSVVNKDI
SQLVEVRPESERFFRLLELLGEWYEKGKILIFVHSQEKCDSLFRDLLKHGYPCLSLHGAK
DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRA
GRKGSAITFISDDDARYAPDLVKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGTGYG
GSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSDDEDEGVRKAGGDISQQAALAQIAAI
AAASKVGAVSMPSTVPAAQLLPNGGLPVSLSGVLGLTIPGSVAAAVPGSVLPMTPNDGAA
RAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWRVTHKDTLIPISEWTGAA
ITTRGQYYTTGKVPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTIQAISNPSAVQP
GKYSVVK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggagaaatctagaagggaagattcagatttgaagaagagtcaccgggatcgggatcgg
aatggagagagacacagggagagggagagagacaaggagaagaaagagcaccgggagagt
cggcgctcggagagagagaagagtagtgatgacaagcatagggagaaggagagggataag
cacagggataagcgggacaaggaacgaacaaggagcagccgggatgatgaacgagataga
gcgagagaaagaaccaaggacagagaaaaggagagggacagggaccatgaaggtcgagat
gctgaaagagagaaggagagagagagggataaggagagcagagagagggcaagggagaaa
gaacgtgaggatagagagagggagcgagaacgagagaaggaaagagagagggagaaggca
agggagagggagagggagaaggagagggaaagagagaaggagagggagagagagagagaa
agagaaagagagaagagagatagggagagggaagatagagagagagagaaggaaagagat
agagagaggttacgggaaagggaaaagcgtcgggagcctgataggaatgatagtagtgat
ggtgatgatgtcagagaccgtgatagaaagcggcgcaggagagatgatgattacaaggat
agagagcgtgatcggagtggcaggtctaacaggcacagagatgaaggtgaagacagccct
agaaagaagagcgatgatgatgatttggataagaaagagagaagaactcgagaagaagat
ttagaggaagaacaacggaaactggatgaggaaatggaaaaacggaggagaagagttcag
gagtggcaagaattaaagagaaagagggaagaatctgagagagaaaagctgggagaggct
gcgaatgctgatgagcccaagtctggcaagacctggaccctagaaggagaatctgatgat
gaagatgttgccccaactggcaattctgagacagatttgaacatggatgaagatgccaag
cccactgataatgaagttggagatggtatggcaatagattctcaaaatggaacttctgca
tccactctgcagaatggggatgaaggtgctgatggagatgaggaaattgatccattagat
gctttcatgaattctatggtgttgcctgaagtagagaagctaaacaatgctgcagtttct
ccaactagcaatgctgtggttcccagtgaagattctgattcagactatggtgaccttgaa
aacaatgaagatcctttggaggaagaagatgatgatgagttcatgaaaagggtgaaaaag
acaaaggctgagagactatcaattgttgaccactcaaaaatagattataaaccattccgg
aaaaatttctatattgaagtaaaggagagtgcaaggatgactcctgaagagattgctgct
tacaggaaacagttggaattgaagatacatggcaaggatgtgccaaagccggtgaaaacc
tggcaccagactgggctgacaactaaaatcttagacaccataaaaaagcttaactatgaa
agaccaatgccaattcaagctcaggcacttccaataattatgagtggtcgagactgcata
ggtattgcaaagactggctctggtaaaaccctagcatttgtgttgccaatgttgaggcat
atcaaggaccagccacctgtgatgcctggagatgggcctattggccttataatggcacct
acaagggagcttgtccagcagatccatagtgacatcaagaaatttgccaaagtagtgggt
attagctgtgtgcctgtgtatgggggttctggtgttgcacaacaaattagtgaattaaag
cggggggctgaggttgttgtctgcactccagggagaatgattgatatactttgtacaagt
ggcggaaaaattacaaatttgcgtagggtgacatatttggtcatggatgaagctgatcga
atgttcgacatgggttttgaacctcagatcactagaattgttcaaaatactcgacctgac
cgtcaaactgtgctattctctgccactttccctcgtcaggttgaaattttggcccgtaga
gtgttgaacaaacctgtggaaatacaggttggtgggagaagtgttgtgaataaggacata
agccagttggtcgaggtgagacctgaaagtgaaaggttcttcagactgttagaactacta
ggagaatggtatgaaaaaggaaaaattttgatatttgttcactcgcaggaaaaatgtgat
tctctgttcagggatttgcttaagcatggttatccttgcctctcacttcatggagctaag
gatcagacagaccgtgaatccaccatttctgatttcaagagtaatgtatgcaatttgttg
attgcaacaagtgttgctgccaggggtttagatgtgaaggagttagagttggtaattaat
tttgatgttccaaaccattatgaagactatgttcatcgtgttggtcggacaggtagagct
ggccggaaaggctctgctatcacatttatctctgatgacgatgcaagatatgcaccagat
ctagtgaaagccttggagctctctgagcaagttgttcctgatgacctgaaagctcttgcg
gatggttttatggcaaaagtgaatcagggacttgagcaagcccatgggactgggtatggt
ggaagtggttttaaatttaatgaagaggaggatgaagtcaggagagcagcaaagaaagct
caggcaaaagaatatggctttgaggaagacaagtcagactcagatgatgaagatgaaggg
gtccgaaaggcaggtggtgacatctcacagcaagctgcccttgctcaaatagctgctatt
gctgctgcctccaaagttggtgccgtttcaatgccaagcactgttccagctgctcaactg
cttccaaatggtgggctccctgtatctctgtcaggtgtccttggtttgacaataccaggc
tctgtagcagcagctgtgccggggtctgtgctgccaatgacccctaatgatggggcagct
cgggcagcagccttggctgctgccatcaacttgcaacacaaccttgcaaagattcaagct
gatgcaatgcctgaacattatgaagctgagttggagattaatgatttcccccagaatgct
agatggagggtgacccacaaagatactttgattccaatttcagaatggaccggagctgcc
attaccacaagggggcagtactatacaacaggtaaggtcccaggaccaggagagcgcaag
ctctacttgttcattgagggccctactgaacaatctgtcaagagagcaaaagcagaacta
aaacgtgtcttggaggacttcacaattcaggctatttcaaatcctagtgcagtccaacca
ggcaaatactctgttgtgaaataa
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