KEGG   Vitis vinifera (wine grape): 100262610
Entry
100262610         CDS       T01084                                 
Name
(RefSeq) THO complex subunit 1 isoform X2
  KO
K12878  THO complex subunit 1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03013  Nucleocytoplasmic transport
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100262610
  09122 Translation
   03013 Nucleocytoplasmic transport
    100262610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100262610
   03041 Spliceosome [BR:vvi03041]
    100262610
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100262610
Spliceosome [BR:vvi03041]
 Complex C
  Other components
   EJC/TREX
    100262610
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100262610
SSDB
Motif
Pfam: efThoc1 Herpes_UL92 HSM3_N
Other DBs
NCBI-GeneID: 100262610
NCBI-ProteinID: XP_010659074
LinkDB
Position
13:complement(join(21905006..21905245,21906238..21906387,21906475..21906534,21908759..21908809,21908995..21909066,21913613..21913679,21915580..21915662,21915786..21915902,21925204..21925269,21925397..21925522,21925635..21925706,21942996..21943042,21943170..21943235,21943369..21943441,21944852..21944923,21945027..21945172,21949377..21949470,21956492..21956566,21957327..21957410,21957602..21957604))
AA seq 587 aa
MEIFKQALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQS
GEKIMQYGQSIDDEEAIQSQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKD
IFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDAPEGISIDFNFYKTFWSLQEHFCNPASISLAPTKWQKFT
SNLMVVLNTFEAQPLSDEEGNANNLEEEAATFSIKYLTSSKLMGLELKDPSFRRHILVQC
LILFDYLKKEEIKSCEERVKKLLEMTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFER
QPIEKKAVQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRARTPAVSEYWKPLAE
DMDLSAGIEAEYHHKNNRVYCWKGLRFAARQDLDGFSRFTEYGIEGVVPMELLPSDVRSK
YQAKPSDRSKRAKKEETKGAAQQAEENQIATPASEIDGEGTRVDLEASAAPMDTDVTATT
PTADENQKQSSDTDAGQEAGQSEADAEAEAGMIDGETDAEVDLDAVG
NT seq 1764 nt   +upstreamnt  +downstreamnt
atggaaatattcaagcaggccttactgaaacctgggccaccggaaagttttgctctccag
gtagtgcaagaggccataaaacctcagaagcaaacaaaactagctcaagatgagaatcaa
ttgttagaaaatattcttcggaaattacttcaggaacttgtgtcatgtgccgttcaatca
ggggagaaaattatgcagtatgggcaatcaattgatgatgaggaagcaatccaaagtcaa
attccacgccttttggacattgtgctgtatctttgtgagaaagaacatgttgagggtggt
atgatattccagctattggaagatttaacagaaatgtctacaatgagaaactgtaaagac
atctttgcttatatagagagtaaacaagatatattggggaagcaagagctctttgcacgt
ggaaagcttgtgatgctgaggacgtgcaatcaacttcttcgtcgtctgtcaaaggcaaac
gatgtggttttttgtggacgaattctcatgtttctggctcatttctttcccttgtccgag
cgttcagctgtgaatataaagggggttttcaacacatctaatgaaacaaaatatgagaaa
gatgcccctgaaggaatttctattgatttcaacttttacaagactttttggagtttacag
gaacacttttgcaatcctgcttctatatctcttgctcctaccaagtggcagaaatttaca
tccaatttaatggttgtgttgaatacctttgaagctcagcctttgagtgatgaagagggc
aatgctaataatctggaggaagaggcagcaactttcagcataaaatatcttacaagcagt
aaactaatgggattagagttgaaagacccaagttttcgacgccatattcttgttcaatgc
ctcatattgtttgattatctgaagaaagaagagataaaatcttgtgaagagcgtgtgaag
aaactgcttgagatgaccccaccgaaagggaaagagtttcttcataacattgagcatata
ctagaacgtgaaaagaattgggtatggtggaaacgtgatggttgcccaccatttgaaaga
cagccaatagagaagaaagctgttcaagatggtgccaaaaaacgtaggccaaggtggaga
atgggaaataaagaactctctcagttgtggaagtgggcagatcaaaacccaaatgctctt
actgatccacagcgtgcccgcactcccgctgtctcagagtattggaaacccttggctgaa
gatatggacttatccgctggaattgaagctgaataccaccataaaaacaaccgggtttat
tgctggaaaggtcttcgatttgcagctcggcaggacttggatggattttctagatttact
gagtatggaattgaaggggttgtgcctatggaacttttgccttcagatgtccggtccaaa
tatcaagctaaaccaagtgacaggtctaaacgtgctaaaaaagaagaaacaaaaggtgct
gcacaacaagcagaggaaaaccagatcgcaacacctgcaagtgagattgatggggaggga
accagagttgatcttgaagcctcagcagcaccaatggacactgatgtcacagccacaact
ccaacagcagatgaaaatcagaagcaaagctctgacaccgatgcgggtcaggaggcaggg
cagtcagaagcagatgctgaagcagaggctggaatgatagatggggagacagatgcagag
gttgatttagatgcagttggctga

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