KEGG   Vitis vinifera (wine grape): 100852735
Entry
100852735         CDS       T01084                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X4
  KO
K14328  regulator of nonsense transcripts 3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03013  Nucleocytoplasmic transport
vvi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100852735
   03015 mRNA surveillance pathway
    100852735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100852735
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     100852735
   mRNA cycle factors
    P-body specific factors
     100852735
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 100852735
NCBI-ProteinID: XP_010657967
UniProt: D7TGS2
LinkDB
Position
12:complement(join(22860242..22860280,22860388..22860512,22860610..22860708,22860980..22861418,22862416..22862489,22877299..22877446,22893872..22893985,22897487..22897566,22897784..22897882,22897989..22898084,22898333..22898439,22901124..22901263))
AA seq 519 aa
MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYME
FVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRRSLSNG
KLSRRASGSSSGNPSLGSSKRGSEKRRLSTTMYVLRDTAKSTSAKDKSTFILVPKRDDQL
LSDKSVNLAAGGGAEALEEESGVSGAVDAGKKKVLLLKGKEREISHHLLQQNVTSPVKNI
LGANAPKQNQRREGSGRIIRSILLNKDARQSQSSMFQTEQQSQASNLEKEKRPPRPPHIQ
LASKETNGAQDDKVVGNDVHSFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSS
SASQPTSSDFPEGSHGEMRSDMSNARSGEVKALGSGRGGHSALDNGSHKHSGRRGPTHSV
KDADGSSIVSEGKHSKRGSAPGYGSHEKQVWVQKSSSGP
NT seq 1560 nt   +upstreamnt  +downstreamnt
atgaagggtccgttggatcgaaccaaggtcgtggtccggcacttgccgccgacgatttcg
gaggccgcgtttttggaacaaatcgataccgtcttcaaggggcgctacaccttggtcaag
tttcgtcccgggaaaaacagccagaagcgacagtcctattcgagagcataccttgacttc
aagaggccagaggatgttattgagtttgctgagttctttgatgggcatgtttttgttaat
gagaaaggtactcagtttaaaactattgttgagtatgctccttcacaacgcattccaaaa
cattggcctaaaaaggatggccgtgaagggacaatatttaaagatcctgagtacatggag
tttgttgaacttcttgcgaagcctgttgagaatcttcccagtgcagaaatacaattggag
agaagagaagcagaacgagctggtgctgtgaaggacactcctatagttacgcctctaatg
gattttgtccgtcagaaaagagctgccaagggtgtatcccggagatcattatctaatgga
aaactaagcagaagggccagtgggtcatcatctggaaatccaagtctgggctcatcaaaa
cggggttctgaaaagagaagactctccaccacaatgtatgttttacgggatactgcaaag
agcacaagtgcaaaagacaagtcaacgttcattctggttccaaagcgagatgaccagctg
ctgtctgataagtctgttaatctagctgctggaggtggagctgaagcattggaagaggaa
agtggagtttctggagctgttgatgctgggaagaagaaagtcctcctcctgaaaggaaaa
gagagagaaatttctcatcatttactgcagcagaatgtaacatcaccagtaaagaatata
cttggtgcaaatgctcccaagcagaatcagagacgtgaaggtagtggaaggataatcaga
agcatacttttaaacaaggatgcacgtcaaagtcaatcttctatgttccagacggagcaa
cagtcccaagcctctaacttagagaaggagaaacgacctcctcgccctccacacattcaa
ttggcttcaaaggagacaaatggagctcaagatgacaaggttgttgggaatgatgtgcat
agttttgtcagtgagaagcaggacaaacgtacaagaaataaggatagacctgaccgtggt
gtatggactcctcttcgccgttcagatggatcacatgcaagtgatgagtctttgtcatcc
tctgcttctcaacctacatcttcagattttcctgaaggaagtcatggagaaatgagatct
gacatgtcaaatgcaaggagtggtgaagtcaaagcacttggaagtggacgtggtggccat
tctgcattagataatggatcccataaacacagtggtcgccgtggaccaacacacagtgta
aaggatgctgatggctcttcaattgtaagtgaggggaagcattcaaaaagaggaagtgct
cctggatatggttcccatgagaaacaagtgtgggttcagaagtcaagttcaggtccttag

DBGET integrated database retrieval system