Vicia villosa (hairy vetch): 131621849
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Entry
131621849 CDS
T09680
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131621849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131621849
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131621849
Spliceosome [BR:
vvo03041
]
Complex C
Other components
Step II factors
131621849
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_24
Flavi_DEAD
AAA_30
nSTAND3
T2SSE
AAA_16
Sigma54_activ_2
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
131621849
NCBI-ProteinID:
XP_058748873
LinkDB
All DBs
Position
Unknown
AA seq
1264 aa
AA seq
DB search
MEKNQIAEVVDIEKTTMIMEPEKSTGGGLFVPGKERVVYVAPERKSRLGLDTLAIAKRGE
SQSEVGFKVPKEITTSIAAAADDENESSVVEEGVHTGSRRSHRKYRETTSETTRARETTS
ETTRADSSLTEEASPSHRRDRSERSDRRDRSERSDRRDHSERSDRSERSDRRDGSERSHY
HKSERREEQRSERSERHSGYYSKRTRYDSDDHRRERSYSGRSDWDSGRWEWEDTPRRDNV
SSSRRHQPSPSPMFVGASPDARLVSPWLGGHTPNSHTPSPWDHVSPSPLPIRASGSSVKS
SVSEYNRRSHAFKEEIAGKSDLDEKHSYTEITESMREEMERDADRAWYDREEGSTFDSDN
SSLFLGDEASFQKKEAELAKRLTRRDGTKMSLSQSKKLSQLTADNAQWEDRQLLRSGAVR
GTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGST
LVREIHEKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAVVGEDGEIDFKEEAKF
SQHMKKGEAVSDFAKSKSLSEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKTTQLT
QYLHEDGYTIGGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKIGYAIRFEDVTGPNTIIK
YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSAT
LNAQKFSNFFGSVPIFHIPGRTFPVNILWSKTPCEDYVEAAVKQAMTIHITSPPGDILIF
MTGQDEIEAACYALAERMKQMISSSNKEVPKLLILPIYSQLPADLQAKIFQKAEDGARKC
IVATNIAETSLTVDGIFFVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTG
PGTCYRLYTESAYLNEMLASPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNIL
NSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLMGDQLGCLEEVLTIVSMLSVP
SVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHYLHVKGLRKA
REVRSQLLDILKTLKIPLTTCWPDTDVVRKAICSAYFHNSARLKGVGEYVNSRNGMPCHL
HPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVEPHWLAELGPMFFSVKESDTSLLEH
KKKQKQEKTAMEEEMENLKKEQAELERENKQKEREKMAKNQQQISMPGLKKGSSTFLRPK
RFGL
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaatcaaattgctgaagtagtggatattgagaagacgacaatgattatggag
cctgaaaagtctaccggaggtggactctttgttcccgggaaggaaagggtagtgtatgtc
gcaccggagagaaaatcgcgattaggactagataccctggccatcgcgaaacgcggggag
tctcaaagtgaagtgggattcaaggtgccaaaagagattaccacatcaattgcagctgct
gcagatgatgaaaacgagtcctctgttgttgaggaaggtgtacatacgggttcgcggcgt
tctcatagaaaataccgtgagacaaccagcgaaacaacccgggcccgtgagacaaccagt
gaaacaacccgggcagattcttctcttactgaagaagcttcaccttcacacaggagagac
cgtagtgagaggagcgacaggagggaccggagtgagaggagcgataggagagaccatagt
gagaggagcgaccgtagtgagaggagcgacaggagggatggcagtgagaggagtcactat
cataagagtgagcgaagggaagaacagaggagtgagaggagtgaaaggcattctggatac
tatagtaagagaaccagatatgacagtgacgatcataggagggagaggagttattcagga
agatctgactgggacagtggcagatgggaatgggaagatactccacgcagggataatgtg
tctagttctagacgtcatcaaccctcaccatctccaatgttcgttggcgcctcgcctgat
gcacgactagtttctccgtggttggggggccatactcctaattcacatacaccttctcct
tgggaccatgtttctccgtctcctcttccaatacgtgcttctggatcttcagtcaaatct
tccgtttctgaatataatcgaaggtcgcatgcatttaaggaggaaatagcaggcaagtcc
gacttggatgaaaaacactcatatactgagataactgaaagcatgcgtgaagagatggaa
cgtgatgcagaccgagcatggtatgatagagaagaaggtagcacgtttgattctgacaac
tcatcactatttcttggagatgaggcttcctttcagaagaaagaggccgagttggctaaa
agactgacccgaagagacgggacaaagatgtctctatctcaaagcaagaaattatctcag
cttacagctgataatgctcaatgggaagatcggcaactgctgagatcgggtgctgttaga
ggtacagaggttcagactgaatttgatgacgaggatgaacgcaaagtcattcttcttgtg
cacgatactaagcctccttttctcgatggtagagttgtttttactaagcaggcagagcca
attatgccaataaaagatccaacatcagacatggctataatttctcgtaaaggatctact
ctggtaagagaaatccacgagaaacagagttcaaataagtctcgccaacgcttttgggaa
cttgctggctcaaaacttggtgatatcttaggcgttgaaaaaacagcagaacagattgat
gccgacactgctgtagtgggtgaagatggtgaaattgattttaaggaggaagctaagttt
tcacaacacatgaaaaagggagaagctgtgagtgactttgctaagtcaaaaagtctttca
gagcaaaggcagtatctgcctattttttcagtgcgagaagagttattacaggtgattcgt
gaaaatcaggtggtggttgtagttggggaaactggttcaggaaagacaacccaattgaca
cagtatctgcatgaggatggctataccataggtggtatagtaggttgcactcaaccaagg
cgtgtggcagctatgagtgttgccaagagagttagtgaggagatggacacagagttaggc
gataaaattggctatgctatacgttttgaggatgtgactggaccaaataccataataaag
tacatgacagacggggtacttctacgtgaaacacttaaagactctgatttagataagtat
agggttattgtgatggacgaagcccatgaaaggtcattaagcacagatgtcctttttgga
atattgaagaaagttgtagcccaacgtcgtgatttcaagctgattgttacatcagcaact
ctgaatgcacagaaattctcaaatttctttggaagtgttccgatttttcatattcctggg
agaacatttcctgtcaatatattatggagcaaaactccttgtgaagattacgttgaagct
gcagtgaagcaagctatgactattcacataaccagccctccaggtgacatccttatcttc
atgactggccaagacgagattgaggcagcttgctatgcccttgctgaaagaatgaagcag
atgatatcatcttcaaacaaagaagtccctaaacttttgattcttcctatatattcacaa
cttccagctgatttgcaagcaaagatatttcagaaagctgaagatggtgctcgcaaatgc
attgtggccactaacattgctgagacatcactgactgtggatggtatcttctttgtcata
gacacaggctatggtaaaatgaaggtgtacaaccctaggatgggtatggatgctctccaa
gtcttccctgttagccgtgctgctgctgaccagcgtgctggccgagctggtcgaactggc
cctggtacctgctatcgattgtatacagagagtgcttacctaaatgaaatgttggccagt
ccagttccagagattcagagaactaaccttggcaatgtggttttgttgctgaagtctctt
aaagttgaaaatttactcgactttgatttcatggatccacctccgcaggataatattctc
aattctatgtaccagttgtgggtgttgggtgcccttaacaatgtggggggattgactgaa
cttggctggaaaatggttgaatttccactagatcctccacttgctaagatgcttttgatg
ggtgaccagttggggtgtctcgaggaggttcttactattgtttcaatgctttcggtaccg
tcggttttctttaggccaaaggaccgagcagaggagagtgatgctgcacgtgaaagattt
tttgtgccagagtccgaccatctaacgctttacaatgtttatcagcaatggaaacagcat
gattacagaggggattggtgcaacgaccattatttgcatgttaaaggtctcagaaaggct
agagaggtgagatcccagctgcttgatattctcaagactctcaaaattcctttaaccaca
tgctggcccgatacagatgttgtcagaaaagcaatttgttctgcgtacttccacaattca
gcaagattaaagggtgttggggagtatgttaactcccggaatggcatgccatgtcacctt
catcccagtagtgctctctatggcatgggttgcactcctgattatgtagtttatcacgag
ttaattctgacgacaaaggagtacatgcagtgtgccacagcggtggaaccccactggctc
gccgagttaggtcccatgtttttctctgtgaaagagtctgatacatcactactagaacat
aaaaagaaacagaagcaggagaaaacagccatggaagaggaaatggagaatttaaagaag
gagcaagcagagttggagagggaaaataaacagaaggagagagaaaaaatggctaagaat
cagcagcaaatatccatgccaggtttgaaaaagggttcgtccacattcttgagaccaaaa
aggtttggtttgtaa
DBGET
integrated database retrieval system
