Vicia villosa (hairy vetch): 131644675
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Entry
131644675 CDS
T09680
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131644675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvo03021
]
131644675
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131644675
Transcription machinery [BR:
vvo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131644675
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131644675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
131644675
NCBI-ProteinID:
XP_058771215
LinkDB
All DBs
Position
LG1:174705201..174712208
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AA seq
971 aa
AA seq
DB search
MENLRRPIDRSKEPILKRPRLIKDPRHAESSAPMFPQRQQQVTSASRFRQNDTDVENNED
GYQPQPLPFQELVAQYKSGLAELTFNSKLIINNLTRIADENRAAEKAIAATICANILEVP
SEQKLPSLYLLDSIVKNIGRDYIKFFAAKLPEVFCKAYKQVEPPVRQSMKHLFGTWKGVF
PPQTLQAIDKELGFTPAVNGSSSASAALRSDSQTHHPSHSIHVNPKYFERQRVQESSRSN
QHTHRDPFNDPVPEKSISASYGGGEHGSNLSRNMGMGIGRTDGSITELGHRNLYNKAAGV
SGTISGQRNGVGLKHSFSNTEATTISDAQHQPTRNITGIKRNAMSNSWKNSEEEEYMWDD
MNIGLTSHGVRNNLGNDAWTADDENLDAEENHHQIRNVFGTNVDREMTNRSQATQKKQFR
HHPSLSWKLQEHQSIDELDQELGPSDGCMSISGSLLGNANSSAARMGNRAFLPNARIGGQ
QFHSVGSESISGQSPLRQRSPSPPSIDHSHLIENFDKQDHPHSRKTSQFLGGLQSKYIKD
SSPTLSPNIQVGDLRRSSQVKDLQGPLPSASFQPRYQQQLSASPTEVNVKTKKLPLSNVS
LARETSEQPATSHTEIASVKSRLFSNMPITSNLPSLLGSRPSQSGGSSPATLISSVSANA
SPSSSALPKRPQRKAGQSIRTSTLPPASSNVSSASAQTLDATNKTSNPLSNLLSSLVAKG
LISTETETPAEVVSRSEDYCDSFSTSSSMPVASLSGSAVVPVPSTKDELDDTAKTSTSLS
ESTSTDIRNVIGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKLQEQFNRHLEWHA
TREREHSGLTKASRWYLKSTDWVAGQAECSSENEFTDSVDSQDKETDESQEDAMVLADEN
QCLCVLCGELFEDVYCQENSEWMFKGAVYVTNSDSDTETGIKDTSSGRGPIIHTRCLSDN
SLSSVLKMEQD
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagaatttgcgaagaccgattgatagatccaaagaaccgattttgaagcgacccaga
ttgataaaagatccgcgacatgcggaatcgagtgctccgatgtttccacagagacaacag
caagttacttctgcttcacggttcagacagaatgatacagatgtggaaaataatgaagat
ggttaccagcctcagccgctgccgtttcaggagcttgtggcgcagtataagagtgggctt
gcggagctgactttcaattcgaaactgataattaacaacctgactagaattgcggacgaa
aatcgagctgctgagaaggctattgctgctactatatgtgctaacattctagaggttcct
agtgaacaaaagctgccatctctttatctcttagacagtattgttaagaatattgggcgg
gattacataaaattctttgctgccaaactacccgaggtgttctgcaaggcatacaaacag
gttgaacctcctgtccgtcaaagtatgaaacacctttttggaacttggaaaggagtcttt
cctcctcagacccttcaggctatagacaaagaactaggcttcactccagcagtcaatggt
tcgtcttcagcatctgctgcactcaggagtgattcacagacacatcatccatctcacagt
atacatgtgaatcccaagtattttgagagacagcgtgttcaggagtccagcaggagtaat
cagcacactcatagagacccattcaatgaccctgttccagaaaagagcatcagtgcatcc
tatggaggcggtgaacatggttccaatctctcaaggaatatgggcatgggtattggcaga
actgatggcagcataactgagttaggacaccgcaatttgtacaacaaagctgctggtgtt
tcagggaccatatctgggcaaagaaatggtgttggcctgaagcatagtttttcaaatact
gaagctactactatttcggatgcacaacatcagccaacacgaaacataactggcataaag
agaaatgcaatgtcaaatagctggaaaaattccgaggaagaggagtacatgtgggatgac
atgaacattggattgactagtcatggtgtccgtaacaacttgggcaatgatgcttggact
gctgatgatgagaatttggacgctgaagagaaccaccaccaaatcagaaatgtttttggg
acaaatgttgatagagaaatgaccaatagatctcaagccactcaaaagaaacaatttcgg
catcatccgtcgttatcatggaaattgcaggagcatcaatcaattgatgaattggatcag
gaattgggtccctcggatggatgtatgtcaatctctggttccttactaggcaatgcaaat
tcttctgctgccaggatggggaatcgtgctttcctgcccaatgcaagaattggaggacaa
cagtttcattctgtgggatctgaatccatttcagggcagtcacctttgcgacaacgctct
ccttcgccaccaagtatcgaccactctcatctaatagaaaatttcgataagcaagaccat
cctcacagtcgtaaaacatctcagtttttgggaggcctgcaaagcaaatatattaaagat
tcttcacccaccctttctcctaatattcaggttggagacttgcgaagatcatcacaggta
aaagacttgcagggtccattaccttcagcgagttttcagccaaggtatcagcaacaactg
agcgcttctcccactgaagtaaatgttaagactaagaagctacccttgtccaatgtttct
ttagcccgagaaacctcagagcagccagccacaagtcatacagaaattgcaagtgtgaag
agtagactattctccaacatgccaattactagtaatcttccatctctattagggtctcgg
ccttctcagtcaggcggttcttcccctgccacattaatttcttcagtgtctgccaatgct
tctccatcttcatctgctttgccaaaaagacctcaaagaaaggctggacaatcaataagg
acatctactctaccaccagcttcctcgaatgttagcagtgcctcagcccagacattggat
gctacaaataaaacctcaaatccactttcaaaccttttaagctcattagttgcaaagggt
ttgatatccacagaaactgagacaccagctgaggtggtgtctcgatcggaagattactgc
gacagctttagtaccagtagctctatgcctgttgcttcattgtctggttctgcagttgtc
cctgtcccttctactaaagatgagttagatgatactgcaaaaacatctacgtccttatct
gaatcaaccagcacagatattagaaatgtcattggctttgagtttaagcctaatgtaatc
agaaaattgcatccatctgtaattagtggattatttgatgattttccacatcattgcagc
atttgtggccttaagctcaaactccaagagcagtttaatagacacttggagtggcacgcc
acaagagaaagagaacacagtggtttaactaaagcatcaagatggtatctgaagtcaact
gactgggttgctggccaagctgaatgttcatctgaaaatgagtttactgactctgtagat
tcacaagacaaggaaacagacgaaagtcaagaggatgcaatggttctggcagatgaaaac
cagtgcttatgtgtgctatgtggcgagttatttgaagatgtttactgtcaggaaaatagt
gagtggatgttcaaaggggctgtttacgtgactaattcagatagcgatactgagacggga
atcaaagatacgagttctggaaggggtcctatcattcacacaagatgcttatcagataac
tcgttatcgagtgtcctcaagatggaacaagattga
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