Vicia villosa (hairy vetch): 131652831
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Entry
131652831 CDS
T09680
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131652831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvo03021
]
131652831
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131652831
Transcription machinery [BR:
vvo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131652831
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131652831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
VHS
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
131652831
NCBI-ProteinID:
XP_058778792
LinkDB
All DBs
Position
LG2:165028669..165034652
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AA seq
841 aa
AA seq
DB search
MSNENGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYEALLGELTSNVKPII
TDLTIIAEQHREHARGIAYAICARILEVSAEHKLPSLYLLDSVVKNVGQEYVRYFSLRLP
EVFCEAYRQVNPSLHSAMRHLFSTWSKVFPPSVLRKIEAQLQFSQAVNNQPSSVNPLRAS
ESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLGSPGTVGNANFGLAANKVHQLVPSRV
GKSSSPSGIGLDRHMPSYMDEYVVDNSAGRIVERESPHRAVDYGLVKGLSREEELRDWPR
KQFSGDGPKRFPTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMD
KVVTTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQPTIGFSSEKPVTIPGSATSSVSRIF
HGLKSNMEYRPPVLPATFEIRNSINVHAPRPPSLNPTFPFKNPVRNPFESINANSTIVSH
GLNRPFPIHEQSLPGVENNDISKRNPYQLPNQLAGLISSNPQNPVQTPQLQFFPSQDSAA
SQFSYRPSLQGHGAAISTPMSNVRPVMPFPLPGQRTVNNSFHFQGGPLRPLPPAGPHAPS
QMLPHPNPSPFVSSQQPTVGYSNLINSLMAQGVISLANQAPAQDFVGIEFDPDILKVRHE
SAIKALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWL
SGAEALGAESAPGFLPTETTEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMY
RGAVYLNAPNGITAGMDRSQLGPVIHAKCRSESTSTPTEECVMDEGGTYEEGNERKRMRV
V
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgagaatggacagaaacccccaccgtcgatactggttggtcgattcaaggct
ctgttgaagcagcgtgaagatgacccaaggctgagaaattcgcaaccttcaacagaagaa
attgtgcagatttacgaggctttgttgggtgaactcacgtcgaatgtgaaacctatcatc
actgatcttaccatcattgctgaacaacatagggaacatgctagaggaatcgcttatgct
atttgcgctcgtattctcgaggtgtctgcagaacataagcttccttcactctatctcttg
gacagtgttgtgaaaaatgttggccaggaatatgttcgatacttctcactacgtctaccc
gaagtgttctgcgaggcatacagacaggttaatccaagtttgcattctgcgatgcgacat
ctctttagtacctggtcaaaagttttccctccctctgtcttacggaagattgaagcacaa
ttgcaattttctcaagctgttaataatcaaccatcaagtgttaatcccctcagggcttct
gaatctcctcggccaactcatgggatacatgttaacccaaaatacataagacaaatggaa
cactctacctcaattatggatagtgttgtgggtgaaaggttaggttcaccaggaactgta
ggaaatgcaaattttggccttgcagctaataaagttcatcaattggtgccaagtagggtt
ggcaaatcctcttcaccgtcaggaattggacttgataggcacatgccttcatatatggat
gaatatgtagttgacaattctgctggcaggatagttgagagagaatctcctcatcgtgct
gttgattatggactagttaaaggattgagtagagaagaagagttgcgtgattggccgcga
aagcagttttccggtgatggtccgaagagatttccaacttctatgacatacagtcttagt
aacggacaaccacgccaaaatccaagagctctaattgatgcctatggtagtgacaaaagc
caagaaacttctggcagtaagcctttgttagttgagcggttggatagaaatggcatggat
aaggttgtgacgacatcatggcagaacactgaagaggaggagtttgattgggaagatatg
agtccaacactagtggaccatagtagaaacaatggtttcctgcaaccaactattggtttt
tcctcagaaaagcctgttactattccaggcagtgcaacttcttcagtgtcaaggatattt
catggtctcaagtctaatatggagtaccgtccaccagttttgccggcaacttttgaaata
aggaactctataaatgtgcatgctcctcgtcctcccagcttaaatcctacatttccattt
aagaaccctgttaggaatccattcgaatcaataaacgctaatagtaccattgtgagtcat
ggtctgaatagaccatttccgatccatgaacaatcgttgcccggtgttgagaataatgac
atcagtaaaagaaacccgtatcagttacctaatcagctagctggtctgatttcatctaat
ccacaaaaccctgtacaaacaccacagttacagttttttccatctcaagattcagcagca
tcgcaatttagttataggccatctttgcaaggacatggtgctgctataagtacccccatg
tcaaatgtccgacctgttatgccattccctttgcctggccaaagaactgtaaacaactct
tttcatttccagggaggaccgttgcggcctttacctccagccggtccacatgctccatcc
cagatgctacctcatcccaatcctagtccttttgtttcaagccaacagcccactgttgga
tattctaatttgattaattcactcatggcccagggtgtaatctcgttggctaatcaagcc
cctgcacaagattttgttggaattgagtttgatccagatattctgaaggtccgtcatgaa
tctgcaatcaaagccttatatggtgatcttcctaggcaatgcacgacttgtggcctccgt
tttaaatcccaagatgagcacagcagtcacatggattggcacgtgactaagaaccgtatg
tctaaaaaccgtaagcaaaaaccctctcgcaagtggtttgtgagtgagacaatgtggctt
agtggtgcagaggcattgggagctgaatcagctccaggttttttgccaaccgagaccact
gaggaaaagaaagaagatgaagagttggcggttcctgctgaagaggaccagaatacatgt
gcattatgtggagagccttttgatgagttttacagtgatgaaacggaggagtggatgtac
agaggagctgtataccttaatgcgcctaacggaataacagcaggcatggaccggtcgcag
ttaggccctgttatccatgctaaatgcagatctgaatctactagcacccctactgaagaa
tgtgtgatggacgaagggggcacatatgaagaaggaaatgaaagaaaacgaatgcgggtc
gtctga
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