Vicia villosa (hairy vetch): 131662368
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Entry
131662368 CDS
T09680
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131662368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvo03021
]
131662368
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131662368
Transcription machinery [BR:
vvo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131662368
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131662368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
131662368
NCBI-ProteinID:
XP_058788117
LinkDB
All DBs
Position
LG3:114483484..114490200
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AA seq
1030 aa
AA seq
DB search
MEGTRRLLDRSREPGPKKPRLMEGSNPNTRPFPQRQAASGAAALARFRINDREIDTGDGD
HGDGGYHPQPPPHQELVTQYRAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANI
LEVSSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCNTYKHVDPPVHSSMRHLFGTW
RGVFPPQTLQIIEKELGFAPTVNGSASASATIRNDSQSQRPPHSIHVNPKYLERQRLQQS
NKTKGVFDDMTGVIPNANEDSERSNRALGVARPWLDSRINMRNNQHTHRDAFNDSVPDKS
IGGAYGDEEYNSSGSDVGRTGSRLIGGAAETLPGQKNGFSLKHGFSNHEAPKPMNLDAHN
IRNSAMSRNWKNSEEEEFVWDEMNPGLPEHVRNVSSNLNLDPWSADDDNLESEDHLQVTH
QIGTKVDRGISTVKKQLPSSGGHSSLSWGLQKQLPSAKLNMKSGHSEIFVSAPSGLPRNS
NSLAARMRNQSSMPHTTTGTAKIMGQQQFDSEGAESPSEQSPLEQQSPSVPVTTHHTPSV
RNLPEQDCPQTLKTSQHLGGQQSQYIRDSAPATRPNVQVGNLRKSQAKDPRVSSSSATSL
QAKPQQRQLGPSQAEVTLKAKQPLKSKVSLAKAKAKETSEKSTTKSLPATTVKSGVTPNK
SITKSMDASNRPSLSGVKPTRSTGPSPTTLISSGPSSVSLGSPNDHSQTLPKLPQRKVVK
KPKVSTQPSTSSNDRGASAPSSNTVNKINLNPISNLLSSLVAKGLISAGTESAAVVPNET
GIRSKGQTESITTSSSLPVVSILDSATFPVKSSKVEVDGDEVDGDEVDGDEVDDAAKISL
PLSQSTSTEIINLIGFDFKPDVIREMHPHVITKLLEELPHHCSKCGIRLKHLEQFDRHLE
WHATKEREQNDLNGASRRWYAKSNDWIAGKAGYLSESEFTDSVDEHDDENTYEMVLADEN
QCLCVLCGELFEDVYCQEREQWMFKGAVYLNNSDDVSEVESRNVGPIIHARCLSENKISV
VTNTVRLTVN
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaactcgtagattgttggatagatccagagaaccgggtcccaagaagccccga
ttgatggaaggttcaaaccctaatactcgaccctttcctcaacgacaagctgcctctggg
gctgctgcgttggctaggtttcgaattaatgacagagaaattgatactggtgatggtgat
catggggacggtggttaccacccgcagccaccgccgcatcaagagcttgtgactcagtat
agggctgctctggccgagcttactttcaattcgaaaccgataattaccaacttgactatc
attgctggagagaatctttcggctgcgaaatcaattgctggagctgtttgtgctaatatt
ctagaggtttcaagtgatcaaaagctgccatcactttatctcttagatagtattgtcaag
aatattgggcgagattacataaaatactttgctgttagactacctgaggtattctgcaat
acatacaaacatgttgatcctcctgtgcattcaagtatgaggcatctttttggaacttgg
agaggagtctttcctcctcagacccttcaaataattgagaaggaacttggctttgctccc
acagtcaatggttctgcttctgcatctgctacaatcagaaatgattcccagtctcaacgt
ccacctcatagcatccatgtaaatcccaaatatttagaaaggcaacgtcttcagcagtct
aacaagactaaaggagtatttgatgatatgactggagttattccaaatgcaaatgaggac
tcagagaggtcaaacagagctttgggtgttgcacggccgtggctggattctaggattaac
atgcgtaataaccagcatactcatagagatgcatttaatgattctgttcctgacaagagt
attggcggagcctatggagacgaggaatataattctagtggttcagatgttggaagaact
ggaagtaggctcattggtggtgctgcagagaccttacccgggcaaaaaaatggtttcagc
ctcaaacatggtttttctaatcacgaagcaccaaagcctatgaatttggatgcacataac
ataaggaacagtgccatgtcaaggaactggaaaaattcagaggaagaggagttcgtgtgg
gatgagatgaaccctggtttgcctgaacatgtacgtaatgtctctagcaacttgaactta
gacccatggagtgccgatgacgacaatttggaaagtgaagatcacctccaagtgacacat
caaattggaactaaagttgatagaggaatatcgaccgttaagaaacaactaccatcatct
gggggccattcatcattatcatggggattgcagaagcagcttccaagtgccaaattgaat
atgaagtcaggtcactcagaaatatttgtttcagctcctagtggcttacccaggaattca
aattctttggctgcaaggatgagaaatcagtcttctatgccgcatacaactacaggaacg
gccaaaatcatgggacagcaacaatttgattctgaaggtgccgaatccccttctgaacag
tctcctttggaacaacagtctccatccgtgccagtaacaacacatcacactccttcagtg
cgaaatttgcctgagcaagattgtccacaaactctgaaaacatctcaacatttgggtggt
cagcaaagtcaatacattagagattctgcacctgcaactcgtcccaatgttcaggttggt
aacttgcggaaatcacaagcaaaggatccgcgggtttcatcatcttccgcaacttctctc
caggcaaaacctcaacaacgacagctgggcccttcacaggctgaagttactcttaaagct
aagcagccactcaagtctaaagtttctttagccaaagccaaagccaaagaaacttcagaa
aagtcaaccacaaaaagtcttccagctactactgtgaagagtggagtcacccccaacaaa
tcaattaccaaaagtatggatgcaagtaatcgtccatctctatcgggggttaagcctact
cggtcaactggtccttcccctaccacattaatttcttcggggccttcctccgtgtcatta
ggttctccaaatgatcattcacagactttgccaaaactacctcaacggaaggttgtaaag
aagccaaaagtatctactcaaccatccacttcctctaatgaccgtggtgcatcagctccg
agctcaaataccgtcaataagattaacttgaatccaatttcaaaccttttaagttcttta
gttgctaaaggtttgatatccgctggaacggagtcagcagctgtagtgccaaatgaaacg
gggattcgatcgaaaggccaaactgaaagcatcactaccagttcctcattgccagttgtt
tcaattcttgattctgcaactttcccagtaaaatcttccaaagttgaggtagatggtgat
gaggtggatggtgacgaggtagatggtgatgaggtagatgatgctgcaaaaatctcactt
cccttgtctcaatcaactagcacagaaattataaatctcattggctttgatttcaaacct
gatgtaattcgagaaatgcacccacatgttatcacaaaattattggaagaactcccacat
cattgcagtaaatgtggtattaggcttaaacacctagaacagtttgatagacacttggaa
tggcatgctacaaaagaaagagaacaaaatgatctgaatggagcatcaagaagatggtac
gcaaagtcgaatgactggatcgctggcaaggctggatatctgtcagagtctgaatttact
gattctgtagatgaacatgatgatgaaaacacatatgagatggttttagcagatgaaaac
cagtgcttgtgtgttttgtgtggtgagctatttgaagatgtatactgtcaggaaagggag
caatggatgttcaagggagctgtttacctgaacaattccgatgacgttagtgaggtggaa
agtagaaatgtgggccccatcattcatgctagatgcttatcagagaacaaaatatctgtt
gtgaccaatacagtaaggctcacagtgaattaa
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