Vulpes vulpes (red fox): 112913074
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Entry
112913074 CDS
T05911
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vvp
Vulpes vulpes (red fox)
Pathway
vvp03013
Nucleocytoplasmic transport
vvp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112913074 (UPF1)
03015 mRNA surveillance pathway
112913074 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvp03019
]
112913074 (UPF1)
Enzymes [BR:
vvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112913074 (UPF1)
5.6.2.5 RNA 5'-3' helicase
112913074 (UPF1)
Messenger RNA biogenesis [BR:
vvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112913074 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112913074 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112913074
NCBI-ProteinID:
XP_025845377
UniProt:
A0A3Q7RHZ7
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgacttcaccctc
cccagtcagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggtcggcgcgggcgcgggcgctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaactttgaagaagatgaagaagatacctattacacaaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gtcctggagtgttacaactgtggctgccgcaatgtcttcctccttggcttcatccctgcc
aaggctgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctg
aaggacatcaactgggatagctcccagtggcagcccctcatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggctcggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggaaaatccttctgccactttggaggac
ctggagaagccgggcgtggacgaggagccgcagcatgtcctcctgcggtacgaggatgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctctggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcacctgtggaggtgactcataat
ttccaggtggatttcgtatggaagtcaacctcctttgataggatgcagagtgcattgaaa
acgttcgccgtggatgagacctctgtgtcgggctacatctaccacaaactgctcgggcat
gaggtggaggatgtgatcatcaagtgccagctgccaaaacgctttacggcacaggggctc
cccgacctcaaccattctcaggtttacgctgtgaagactgtgctgcaaagaccgttgagc
ctgatccagggaccaccaggcacagggaagacggtgacctctgccaccatcgtctatcac
cttgctcggcagggcaatgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagttgtacggctttgtgccaagagc
cgtgaggccatcgactccccagtgtcattcttggccctgcacaaccagatcaggaacatg
gacagcatgccagagctacagaagctacagcagctgaaggatgagacgggggagctgtca
tctgctgatgagaagcggtaccgggccctgaagcgtaccgctgagagggagctgctcatg
aatgcagatgtcatctgctgcacatgtgtgggtgcaggggacccaaggcttgccaagatg
cagttccgctccattttaattgacgagagcacccaggccactgagccagaatgcatggtc
cctgtcgtccttggtgccaagcagctcatcctcgtgggtgaccactgccagctgggcccc
gtggtgatgtgcaagaaagcagccaaggctggactatctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgtcccatccgcctccaggtccagtatcggatgcaccctgcgctc
agtgccttcccatccaacatattctacgagggctctcttcagaatggcgtcactgcagct
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccaatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctacctgaacaggacg
gaagctgcaaacgtggagaagatcaccacgaagctgctaaaggcgggtgccaagcctgac
cagattggcatcatcacaccttacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctctctgcacaccaagctctaccaggaggtagagattgccagcgtggacgca
ttccaggggcgagagaaggacttcatcattctttcctgtgtgcgagccaacgagcaccaa
ggcattggatttttaaacgaccccaggcggcttaatgtggccctgaccagagcaaggtat
ggggttattattgtgggcaacccaaaggccctgtccaagcagcccctctggaaccacctg
ctgaactattacaaggagcaaaaggtgctggtggaggggcccctgaacaacctgcgggag
agccttatgcagtttagcaagcccaggaagctggtcaataccatcaacccgggagcccgc
ttcatgacgacagccatgtatgatgcccgggaggctattatcccagggtcggtctatgat
cggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
attagtgcaggccccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccacccatgccaccaccaggatattttggacaagcaaatgggccagctgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggatgtggcatcgcagccc
ttctcccagggcgccctgacacagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
