Vibrio ziniensis: G5S32_09960
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Entry
G5S32_09960 CDS
T07449
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vzi
Vibrio ziniensis
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vzi03016
]
G5S32_09960 (rnd)
Enzymes [BR:
vzi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
G5S32_09960 (rnd)
Transfer RNA biogenesis [BR:
vzi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
G5S32_09960 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
SRPRB
Motif
Other DBs
NCBI-ProteinID:
QIH42303
UniProt:
A0A6G7CJS8
LinkDB
All DBs
Position
1:complement(2184957..2186075)
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AA seq
372 aa
AA seq
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MNYQIITQFNELERVCLLARDADVVMLDTEFVRTRTYFPQLGLIQLFDGENLSLIDPLSL
DDMSPFTQLLQDTSVLKVLHACGEDLEVFQNAFGCVPFPMVDTQVMAAFLGYGLSTGFAS
LVKDLLGVELDKSESRTDWLARPLSQKQLDYAAADVFYLQPMYEQLLEKVTQVDWWYAAQ
QESELLVEKRIKSVNPDNVYLDIKGAWQLRPKELAILKPLATWRYHEAVKRDLALNFVVR
ENELLTIARLALRSSKRMIEEGVDPHAVRRHSTKLIQIVKDAMQTPEDQYPEKIVPLMDY
PGYKQLFKKLKDEVKAVSQTTGLATEFLASKKQLNQLLSWVWNDQRDPEHLPDVMSGWRL
PILGERLEKLVD
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcaaattattacccagtttaacgagttagaacgtgtgtgcttattagcgcga
gacgcagatgtcgttatgctcgataccgaatttgtccgtacgcgtacttattttccgcag
ttaggtcttatccagttgtttgacggtgagaatctctctctgattgaccctctcagcttg
gatgatatgtcgccgtttacgcagttacttcaagatacttctgtattaaaagtactacat
gcttgcggtgaagatttggaagtgttccagaatgcctttggttgcgttccattccctatg
gtagacacccaagtgatggctgcttttcttggctacggtctttcaacaggctttgcttct
ttggtgaaggatttattgggtgttgagttagataaaagtgaatctcgtactgactggctt
gcgcgtcctttatcacaaaagcaacttgattatgccgcagccgatgtcttctatttacag
cctatgtatgaacaactgctagaaaaagtgactcaagtcgattggtggtatgcggcgcag
caagagtcggaattgttagttgaaaagcgcatcaaatcagtcaaccctgataacgtctat
ttggatattaagggtgcttggcaactaagaccaaaagagttagcaatcttaaaacctttg
gcaacatggcgttatcatgaagcggtgaaacgcgatttagcattgaactttgtggtacgt
gaaaacgaactgctgaccattgctcgtttggctctgcgtagttcaaaacgcatgattgaa
gaaggggtagacccacatgccgttcgtcgccacagtactaagctgattcaaatcgtaaaa
gacgcgatgcaaacacccgaagatcagtaccctgagaaaatcgtacctttgatggattat
ccgggttacaagcagttgtttaagaagctaaaagacgaagtgaaagctgtatctcaaaca
acagggttagcgactgaatttttagcgtccaaaaaacagctcaatcaactattaagttgg
gtttggaatgaccagcgagatccagaacatttgcctgacgtgatgagtgggtggcgttta
cctattcttggtgaacgtttagaaaagctggtggattaa
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