Wenyingzhuangia fucanilytica: AXE80_13725
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Entry
AXE80_13725 CDS
T04444
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wfu
Wenyingzhuangia fucanilytica
Pathway
wfu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXE80_13725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wfu03400
]
AXE80_13725
Enzymes [BR:
wfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXE80_13725
DNA repair and recombination proteins [BR:
wfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXE80_13725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Adeno_E1B_19K
DUF2482
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
ANW97287
UniProt:
A0A1B1Y933
LinkDB
All DBs
Position
complement(3325341..3328667)
Genome browser
AA seq
1108 aa
AA seq
DB search
MKIQSLLEKYQNASATKQLIAQVSQEKTHAVLSKFNGASLSFIIAETFKQTDKTFLVIFD
DKEQAAYHLNDLERILNDKDVLFYPGSYRRPYEIEDVDNANVLMRAEVLNRLNSRKKPAI
IVTYPNALFEKVVTKKDLNSNTLKITTGDEFSLDFINEVLFEYKFNRVDFVTEPGEFAVR
GGIVDVFSFANDEPYRLEFFGDEVDSIRTFDVETQLSTGKPNKIQIMPNVENKQFSEKRE
SFLKFIPNNSVVFTKSIDILQYDLNTLFEKATARFETLSETLNHTFPSDLFLDGIQIKEQ
LKGYSRVAINNSANTDNINGNTEPQPSFNKHFDLLIENLQQNTAKGYQNYLFCSNEKQAK
RFHDIFDESEEEIVYQTVVFQIHEGFVDHEHKIVCYTDHQIFERYNKFQLKNGFAKKQAV
TLQEINNLEIGDFVTHIDHGIGKFGGLQKIDVNGKKQEAIKLIYGDADVLYISIHSLHKI
SKFNGKDGKVPKVHKLGSPAWKKAKQTAKAKVKQIAFDLIQLYAKRKNQKGFAFDPDSYL
QHELEASFMYEDTPDQFTATQDVKSDMESDKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG
KQVAVLVPTTILAFQHFKSFKKRLEDFPVNINYLNRFKTAKQKKIVMEDLAEGRLDIVIG
THQLVSDKIKYKDLGLLIIDEEQKFGVAAKDKLKTIKENVDTLTLTATPIPRTLQFSLMA
ARDLSVIATPPPNRHPIESNVIGFSEEAIRDAVMYEISRGGQIFFIHNRVDNIKEVAGML
QRLVPDARIGVGHGQLEGRKLEEVMVNFMEGSYDILVATTIIESGLDVPNANTIFINHAN
NFGLSDLHQMRGRVGRSNKKAFCYFICPPYHMMTEEARKRIQALEMFSELGSGINIAMKD
LEIRGAGDLLGGEQSGFITDIGFDTYQKILEEAVKELKEKEFKDLYDEEDAENKDYVSDI
QIDTDFEILFPDDYINVIAERLNLYKKLGELTNEEELQEFEQQLIDRFGELPTQVIDLLD
SVRIKWLAKKLGLEKIVLKQKRMIGYFVSDQQSGFYNTQSFTNVLKYVQNNSKMCVMKEK
ETKNGLRLLITFIRIDSVKKALETLKNI
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaattcaatctcttctagaaaagtatcaaaatgcaagtgctaccaaacaactgata
gcacaggtttctcaagaaaaaacacatgctgttttaagtaaatttaacggagcttccttg
tcatttatcatagcagaaacctttaaacaaacagataaaacttttttagtcatttttgat
gataaagagcaagcggcttatcatttaaacgatttagaaagaattttaaacgataaagat
gtacttttttatcctggttcttaccgaagaccttatgaaattgaagatgtagacaatgcc
aatgtattgatgcgtgcagaggttttaaatcgattgaattcaagaaaaaaacctgccatt
attgttacttatccaaacgctttgtttgaaaaagtagttaccaaaaaagacctaaacagc
aacacgttaaaaattactactggtgatgaatttagcctagattttattaacgaagtttta
tttgagtataaatttaacagagttgattttgtaacagaacctggagaatttgcagttcgt
ggaggaattgttgatgtattttcttttgctaatgatgagccttacagattagaatttttt
ggtgatgaagtagacagcattagaacttttgatgtagaaacacaactttctaccggaaaa
cccaacaaaattcaaatcatgcccaatgtggaaaacaagcagttttccgaaaaaagagaa
tcttttttaaagtttattcccaataatagtgttgtttttaccaaaagtattgacattctt
caatacgatttaaacaccttatttgaaaaggctacagcacgttttgaaaccctatccgaa
acgttaaatcatacctttcctagtgatttatttttagatggaattcaaatcaaagagcaa
ttaaaaggatatagcagagttgccattaacaatagtgctaacactgataatattaacgga
aatacagaacctcaaccttcttttaacaaacattttgatttgttaatagaaaacctacaa
caaaacactgcaaaaggatatcaaaattatttgttctgttctaacgaaaaacaagcaaaa
cgttttcatgatatttttgatgaaagtgaagaagaaatagtataccaaacagtagttttt
caaattcacgaaggatttgtagatcacgaacataaaatagtttgttataccgatcatcaa
atttttgaacgttataataagtttcagcttaaaaatggttttgccaaaaaacaagccgtt
accctacaagaaattaacaatttagaaattggagattttgtaactcacatagaccatgga
attggaaaatttggagggttacaaaaaatagatgtcaacggtaaaaagcaagaagctatc
aaattaatttatggcgatgccgatgtactttatatcagcatacattctttacataaaata
tctaaattcaacggaaaagatggtaaagttcctaaagttcacaaattaggatctcctgcg
tggaaaaaagccaaacaaaccgccaaagccaaagtaaaacaaattgcttttgatttgatt
caattgtatgcaaaacgaaaaaatcaaaaaggatttgcttttgatccagacagttattta
caacatgagttagaagctagttttatgtatgaagatacaccagatcaatttacggctact
caagatgtaaaatctgatatggaaagtgacaaacctatggatagattggtttgtggagat
gttggttttggaaaaacagaagttgctattcgtgctgcatttaaagcggtagacaacgga
aagcaagtagctgttttggttcctaccactattttggcttttcaacattttaaatctttc
aaaaaaagattagaagattttccggtaaacatcaactatttaaaccgttttaaaacggct
aagcaaaagaaaatagtgatggaagatttggccgaaggaagattagatattgttattgga
acccatcaattggtttctgataaaataaaatacaaagacttagggttgctaattattgat
gaggaacaaaagtttggagtagctgccaaagacaagttaaaaaccattaaagaaaatgta
gatactttaacattaaccgcaactccaataccacgtaccttgcagtttagcttgatggct
gcaagagatttatcggtaattgcaactcctccacccaaccgtcatcctatagaaagtaat
gtgattggttttagcgaagaagctattagagatgctgtgatgtacgaaatttctcgtggt
ggtcaaattttctttatacacaaccgagtagacaacattaaagaagttgccggaatgtta
caacgtttggttcctgatgctagaattggagtggggcatggtcagctagaaggtagaaag
ttagaagaagtgatggttaattttatggaaggaagctacgatattttagtggccaccacc
attatagaatctggtttagatgtgcctaatgccaatactatttttatcaatcatgctaat
aattttggtttgtcagatttacatcaaatgcgtggtcgtgtggggcgttctaacaaaaaa
gctttctgttattttatttgtccaccttaccatatgatgaccgaagaagctcgtaaacgt
attcaagctttagaaatgtttagcgagttaggtagcggaattaacattgccatgaaagat
ttagaaattcgtggagctggagatttattaggaggagaacaaagcggatttattacagat
attggttttgatacttatcaaaaaatattagaagaagccgttaaggaattaaaagaaaaa
gagttcaaagatttatatgatgaagaagatgctgaaaacaaagattatgtatccgacata
caaatagataccgattttgaaattttattccctgatgattatatcaacgttattgcagaa
agattaaacctgtataaaaaattaggagaattaaccaacgaagaagaattacaagaattt
gaacaacaactaatagataggtttggagaacttccaacccaagtgattgatttattagac
tctgttagaattaagtggttggctaaaaaattaggattggaaaaaatagtcttaaaacaa
aaaagaatgattggatattttgtttccgatcaacaaagtggtttttataatacccagtcg
tttacaaacgttttaaaatacgtgcaaaacaattctaaaatgtgtgtaatgaaagaaaaa
gaaaccaaaaatggtttgcgtttactcattacttttattaggattgatagcgtaaagaaa
gccttggaaacattaaagaatatataa
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