Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitan: WIGMOR_0228
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Entry
WIGMOR_0228 CDS
T01747
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
wgl
Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitan
Pathway
wgl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wgl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WIGMOR_0228 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wgl03021
]
WIGMOR_0228 (rpoC)
03400 DNA repair and recombination proteins [BR:
wgl03400
]
WIGMOR_0228 (rpoC)
Enzymes [BR:
wgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WIGMOR_0228 (rpoC)
Transcription machinery [BR:
wgl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WIGMOR_0228 (rpoC)
DNA repair and recombination proteins [BR:
wgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WIGMOR_0228 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AFA41074
UniProt:
H6Q4L4
LinkDB
All DBs
Position
complement(224616..228833)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKTQNKIEEFDAIKIALASPDMIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEEGMTNLEQRKILTEEQYLDALEEFGDEFDAKM
GAEAIQELLKNINLKETCNQIRQELLEINSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELNGFATTIKAAKKMVEREESVVWDILEEVIKEHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCINQKGEGMLLSSPKEAEHVYHSK
IANLHAKVKVRITQYKKLNSGQFEKTIQVVDTTIGRSILWMIVPKGLSFELVNQVLGKKS
ISNMLNTCYRILGLKPTVMFADQIMYTGFSYAAKSGASVGIDDIVIPSKKSKIIQDAEKE
VSEIQEQFQSGLVTAGERYNKVIDIWAAANERVARAMMKNLSTDTVVDHNGIQHKQVSFN
NIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLSGITMTPVIEGGEVKEPLRERVL
GRVILEDILQPGTSNVLINRNILLSETWCNILEKHSIDKIKVRSVVTCETNFGVCAKCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAARSASESSIQSRNDGIIKL
NNAKFVITENNKIIITSRHAALKIIDKFGRTKEKYKLPYGAIVNKNTGEKIYNREIIANW
DPHTIPIITEVSGYIKFSDIIEGQTVTRQTDELTGVSFISVLDTAERTGINKELRPALKI
INAEGKDIYLPGTDIPAQYFLPGKSILQLENGAKIRSGDVLARLSLETSGIKDITGGLPR
VADLFEARKPKEPAILAEISGIVSFGKETKGKRRLIISPVDGSEIYEEMIPKWRNLNVFE
GERVEKGDVISDGPESPHDILRLRGVHAVTKYIVNEVQEVYRLQGVKINDKHIEVIIRQM
LKKATIINSKTSEFLEGEQIEFSRIRIANSTTQNTNKITYSRDLLGITKASLATESFISA
ASFQETTRVLTEAAVSGKKDELRGLKENVIVGRLIPAGTGYAYHKKRLLKRKQKSSALQS
PINHVSVDEASENLKELLKANLRDN
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatctattaaaatttttaaaaactcaaaataaaatagaagagtttgatgcaatc
aagattgctttagcatctcctgacatgattcgatcatggtcattcggagaaattaaaaaa
ccagaaacaattaattatcgtacttttaagccagaaagagacggacttttctgcgcacgt
atttttggtccagtaaaagattatgaatgtttatgcggaaaatataaaagattgaagcac
cgaggcgtaatttgcgaaaaatgcggtgtagaagtaacacaaacaaaagtaagacgcgaa
agaatgggtcatatagaattagcttctcctacagcgcacatttggtttttaaaatcttta
ccatcacgtattggcctattattagatatgccattaagagatattgaacgcgtactatat
tttgaatcttatgtagttattgaagaaggcatgactaatttagaacagcgcaaaattctt
acagaagaacagtatctagatgctttagaagaatttggagatgaatttgatgctaaaatg
ggtgcagaagctattcaagaactattaaaaaatattaatttaaaagaaacatgtaaccaa
attcgtcaagaactattagaaataaattctgaaactaaaagaaaaaaattaactaaaagg
ataaaattgttagaagcatttatacaatctggtaataaaccagaatggatgatattaaac
gttttacccgtacttcctccagatttaagaccattagttccactggatggaggtcgtttt
gcaacatcagatttaaacgatttatatcgtcgagtaattaatcgtaataatcgattgaaa
aggcttttagatcttgcagcacccgatattatcgtgcgtaacgaaaaacgtatgctgcag
gaagccgttgatgcattattagataatggccgtcgcggacgtgcaattacaggatcaaat
aaacgtccattaaaatctttagcagatatgattaaaggtaaacaaggacgttttcgtcag
aatcttcttggaaaacgcgtcgattattcaggaagatctgtaataacggtaggaccatat
ttacgcttacatcaatgtggattaccaaaaaaaatggctctagaattgtttaaaccattt
atttatggaaaattagaattaaatggttttgctacaaccatcaaagctgcaaaaaaaatg
gttgaaagagaagaaagtgtagtatgggatatcttagaagaagtaattaaagaacatcca
gtgatgcttaatcgagcacctactttacacagattaggtattcaagcatttgaaccaata
ttaattgaaggaaaagctattcagctacatccattagtttgcgctgcttataacgcagat
tttgatggcgatcaaatggccgttcatgttccattaacactagaagcccaattagaagct
cgtgcacttatgatgtctacaaataatattttatcccctgctaatggagaacccataatt
gttccatcacaagacgtagtattaggattgtactatatgacgcgtgattgcattaaccaa
aaaggcgaaggcatgctattaagcagtccaaaagaagctgaacatgtatatcattcaaaa
attgcaaatttacatgctaaagtaaaagttagaattacacaatacaaaaaattaaattct
ggtcaatttgaaaaaacgatacaagtagtagatactactattggacgatctattttgtgg
atgattgttccgaaaggattatcttttgagttagttaatcaagtattaggaaaaaaatca
atttcaaatatgttgaatacatgttatcgtattttaggcttaaaaccgacagtaatgttc
gcagatcaaattatgtataccgggttttcatatgccgcaaaatcaggagcttcagtaggc
atcgacgacattgttattccatcaaaaaaatctaaaattattcaagatgccgaaaaagaa
gtatctgaaattcaagaacaatttcaatctggattagttactgcaggagaaagatacaac
aaagtaattgatatttgggcagcagcaaatgaacgtgtagctcgagcaatgatgaaaaat
ttatctacagacactgtggttgaccacaacggtatacaacataaacaggtatcttttaac
aatatttttatgatggccgattccggagcaagaggttcagcagctcaaatcagacaactt
gcaggaatgcgtggactcatggcgaaaccagacggttcaattatagaaactccaattact
gcaaattttagagaaggactaaatgtattacaatactttatttctactcatggagcacgt
aaaggacttgcagatacagcattaaaaactgcaaattcaggttatttaactagaagatta
gtagatgtagcacaagatctcgtcgttacagaagacgactgcggtacattatctggaatt
actatgactccagtaattgaaggcggtgaagttaaggaaccattacgtgaaagagtttta
ggcagagtgatattagaagatattttacaacctggaacatcaaatgttttaataaatcgt
aatattctattaagcgaaacatggtgtaatattttagaaaaacattcaatagataaaatt
aaagtcagatcagttgttacatgcgaaacaaattttggtgtatgcgcgaaatgttacggt
agagatttagctagaggtcatttagtaaataaaggggaagctatcggagttattgctgct
caatctataggagaaccaggtacacagttaacaatgcgtacattccacatcggaggcgct
gcagctcgatcagcttccgaatctagtattcaatcaagaaatgatggaattataaaacta
aataatgcaaagtttgttattacagaaaataataaaattataattacatcacgtcatgcc
gcattaaaaattattgataaatttggaagaacaaaagaaaaatataaacttccatacggc
gcaattgttaataaaaatactggagaaaaaatttataacagagaaattattgctaattgg
gatcctcatactattccaatcattaccgaagtcagtggatatataaaatttagtgatatc
atagaaggtcaaacagttacacgtcaaacagacgaactaacaggcgtatcttttatttct
gtattagatacagcagaaagaacaggcataaataaagagttacgtcctgctttaaagatt
attaatgcagaaggaaaagatatttatctgccaggtacagatatacctgctcagtatttt
ttaccaggaaaatcaattttacaattggagaatggagcaaaaattagaagtggagacgta
cttgcacgtttatctttagaaactagtggaattaaagatattacaggaggtttaccacga
gttgcagatttatttgaagctcgaaaacctaaagaacctgctattttagcagaaattagc
ggcattgtttcttttggaaaagaaacaaaaggaaaaagaaggctaataatatctcctgtt
gacggatcagaaatatatgaagaaatgattccaaaatggagaaatttaaatgtttttgaa
ggagaacgcgtagaaaaaggagatgtaatttctgatgggccagaatctccacacgatata
cttcgtttaagaggagtgcatgcagtaacaaaatacattgtgaatgaagttcaagaagta
tatcgattgcaaggtgtaaaaataaatgataaacatattgaagtaataattcgtcaaatg
ttaaaaaaagcaactattataaatagtaaaacatcagaatttttagaaggcgaacaaatc
gagttctctcggattagaatagcaaatagtactactcaaaatacaaataaaattacttat
tctcgtgatttattaggaattacaaaagcttctctagcaacagaatcttttatttctgca
gcttcatttcaagaaactactcgtgtattaacagaagcggctgtatctggaaaaaaagat
gaattaagaggattaaaagaaaacgtaattgtcggtagattaattcctgcaggtacaggg
tatgcataccataaaaaacgtttattaaaacgcaaacaaaaaagtagtgctttacaatct
cctattaatcatgttagcgtcgacgaagcttccgaaaatttaaaagaacttttaaaagct
aatttaagagataattga
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