Williamsia herbipolensis: OG579_20475
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Entry
OG579_20475 CDS
T09708
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
whr
Williamsia herbipolensis
Pathway
whr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
whr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OG579_20475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
whr03400
]
OG579_20475 (mfd)
Enzymes [BR:
whr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG579_20475 (mfd)
DNA repair and recombination proteins [BR:
whr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OG579_20475 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
AAA_22
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WUM20033
LinkDB
All DBs
Position
4396191..4399907
Genome browser
AA seq
1238 aa
AA seq
DB search
MASPLSSVDARPADPAPVDPLAGLAAVACADAAIAGIRALRGRRALDITGPDSARPFVLA
AAAQPADDPAVPSGPLLVVSANGREADDLTAELRQMIGDAVAQFPSWETLPHERLSPSAD
TVGARLQVLHRLAHPEDAAYGPPLTVVVTTVRSLVQPMAPGVGDTDPITLREGAEFDFDA
LLARLVELAYERVDMVGKRGEFAVRGGILDVFPTTSDLPVRVEFWGDEITEQRAFSVADQ
RSQPEVDASVVHVHPCRELILTDAVRVRAAELIDTEGTDRSLTEMLTKLSEGMPAEGMEA
LIPVLVGGQMQLLTEVMPEGTHVLVLDPEKVRTRAADLAKTGAEFLEASWTAASMGGDAP
LDSNAGDGNGLGGIDLQASSYRPLAEVQETTVAAGRPWWTMSPLETAPDIDDETTVRLDL
APGPAPRGSETELATTFASLRAHVTTGGRATIVVAGRGTAQRYLERLGEAEVPATIGDIG
STPEPGIVSILCGTLRHGLICPDAGLVIVSEADLTGSRVAGAREGKRLPAKRRNQVDPLA
LTAGDMVVHDQHGIGKFVEMIERTVAGARREYLVIEYAPSKRGHPGDRLFVPMDSLDQLS
RYVGGEQPSLSKLGGSDWQNTKRKARKAVREIAGELVALYAARHAAPGHAFAPDTPWQTE
MEDAFGFTETVDQMTVIGEVKSDMEKAVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQV
AVLVPTTILAQQHLQTFTERMAGFPVTIRGLSRFTDAKESREIIDSMAEGGVDIVVGTHR
LLQTAVRWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIRE
MSTILTPPEERHPVLTYVGAYQPKQVAAAIRRELLRDGQVFFVHNRVSSIDKAAKNIQDM
VPEARVVVAHGQMGEEQLERTVAGFWNREFDVLVCTTIIETGLDISNANTLIVDRAEALG
LSQLHQLRGRVGRSRERGYAYLLYSPEKPLTETAYDRLATIAQNNELGAGMAVALKDLEL
RGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKPIMSEENREVRIDLPVDAH
IPADYVDSDRLRLEAYRKLAAALDESDITSIVDELLDRYGPLPAEVSRLVSVAKLRLLAR
ELGVTEIGMAGTQVKIAQVSLLDSQQIRIKRIYPGSSYRATTSVLTLPVPRTAGVGSARV
RDVELIQVVADVLLVIHGSDPGSRDMRGPTITDDHAVS
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
gtggcatctcctctctcgtccgtcgatgcgcgccccgccgatccggcccccgtcgatccg
ctcgccggactcgccgctgtcgcatgtgccgatgcggcgatcgccggcatccgcgcgctg
cgcgggcgtcgcgcactcgacatcaccggtcccgactcggcgcggcctttcgtcctcgcc
gcggcggcccagccggccgatgatcccgcggtgccctcgggtccgctgctggtggtgtcg
gccaacggccgcgaggccgacgacctgaccgccgaactccgccagatgatcggcgacgcg
gtcgcgcagttcccgtcgtgggagacgctgccgcacgaacgactctcgcccagcgccgac
accgtcggtgcgagactccaggtcctgcatcgcctggcccatcccgaggacgccgcctac
gggccgccgctgacggtggtcgtcaccacggtgcggtcgctggtgcagcccatggcgccg
ggcgtgggcgacaccgaccccatcaccctgcgtgagggcgcggagttcgatttcgacgct
cttctcgcgaggctggtggagctggcctacgaacgcgtcgacatggtcggcaagcgcggc
gagttcgcggtccgcggcggcatcctcgacgtgttccccacgacctctgatctcccggtg
cgcgtggagttctggggtgatgagatcaccgagcagcgcgcgttctccgtcgccgaccaa
cgcagccagcccgaggtcgacgcctcggtggtgcacgtgcacccgtgtcgagaactgatc
ctgaccgacgccgtgcgggtccgtgccgccgagctgatcgacaccgagggcaccgatcga
tcgctcaccgagatgctcacgaaactgtccgagggcatgccggccgagggcatggaggcg
ctcatcccggtcctcgtgggtggacagatgcagttgctcaccgaggtgatgcccgagggc
acacacgtcctcgttctcgaccccgagaaagtgcgcacccgcgccgccgacctcgcgaag
accggagcggagttcctcgaggcgtcgtggacggcggcgtcgatggggggtgacgcaccg
ctcgactcgaacgccggggacggcaacggtctcggcgggatcgacctgcaggccagcagc
tatcggcccctcgcggaggtccaggagaccaccgtcgccgcgggtcgaccgtggtggacg
atgagtccgctcgagaccgcacccgacatcgacgacgagacgaccgtgcgcctcgatctc
gccccggggcccgcgccccgcgggtcggagaccgagctcgcgacgacgttcgcctcgttg
cgcgcgcacgtcaccaccggtggccgtgcgacgatcgtcgtcgccggacggggaaccgcc
cagcgctacctcgaacgcctcggtgaggcggaggtccccgcgacgatcggcgacatcggg
tcgacaccggaacccggcatcgtctccattctctgtgggacgttgcggcatgggctgatc
tgtcccgatgcgggcctggtgatcgtctccgaggccgacctcaccgggtcgagggtcgcc
ggagctcgcgagggcaagcgactgccggccaagcgccgcaaccaggtcgacccgctggcg
ctgaccgccggcgacatggtcgtccacgatcaacacggcatcggcaagttcgtcgagatg
atcgaacgcaccgtcgccggtgcgcgccgtgagtacctggtgatcgagtacgcacccagc
aagcgtggccaccccggtgaccgcctgttcgtgccgatggactccctcgaccagctctcc
cgctacgtcggcggcgagcagccgtcgctgtcgaagctcggcggatcggactggcagaac
accaagcgcaaggcgcgcaaggccgttcgcgagatcgccggtgagctcgtcgcgctctac
gccgcgcgccacgccgcaccgggacacgccttcgcccccgacaccccgtggcagaccgag
atggaggacgccttcggtttcaccgagaccgtcgatcagatgacggtgatcggcgaggtc
aagtccgacatggagaaggcggtcccgatggaccgcgtcatcgtcggcgacgtgggctac
ggcaagaccgagatcgcggtgcgcgccgcgttcaaggcggtgcaggacggcaaacaggtc
gccgtgctggtgccgacgaccattctggcgcaacagcatctgcagacattcaccgaacgc
atggcggggttcccggtgaccatccgcgggctgtcgcgtttcaccgacgccaaggagtcg
cgcgagatcatcgactcgatggccgagggcggcgtcgacatcgtggtcggcacccaccga
ctgctgcagaccgcggtccggtggaaggacctcgggctcgtgatcgtcgacgaggagcag
cgtttcggcgtcgaacacaaggaacacatcaaggcgctgcggacccacgtcgacgtgctg
acgatgtcggcgacaccgatcccacgcaccctggagatgtcgatggcgggcatccgcgag
atgtcgaccatcctcacgccacccgaggaacgccacccggtgctcacctacgtcggcgcc
tatcaacccaagcaggtcgccgcggcgatccgacgtgaactgctgcgcgacggccaggtg
ttcttcgtgcacaaccgggtgagctcgatcgacaaggccgccaagaacatccaggatatg
gtgcccgaggcgagggtcgtggtcgcgcacggccagatgggcgaggaacagctcgaacgc
accgtcgccggcttctggaaccgcgagttcgacgtcctcgtctgcacgacgatcatcgag
accggtctcgacatctccaacgcgaacacactcatcgtcgaccgcgccgaggcgctgggt
ctctcgcagctccaccagttgcgcggccgcgtgggtcgcagtcgcgaacgcgggtacgcc
tacctcctctacagccccgagaagccgctcaccgagacggcctacgaccggctggccacc
atcgcgcagaacaacgaactcggtgccggtatggctgtcgcgctcaaggacctggagctc
cgcggtgcgggaaacgtattgggggccgagcagtccggacacgtcgccggggtgggtttc
gacctctacgtccggctggtcggcgaggccgtggaggcctatcgcgctgcggccgacggc
aagccgatcatgtcggaggagaaccgcgaggtccgcatcgacctgccggtcgacgcccac
atcccggccgactacgtcgactccgaccgtctgcgcctcgaggcctaccgcaaactggcg
gcggcactcgacgagtcggacatcacctcgatcgtcgacgaactcctcgaccgctatggt
ccgctgcccgcggaggtgtcgcgcctggtgtcggtggccaaactgcgtctgctggcgcgc
gaactcggcgtcaccgagatcgggatggccggtacccaggtcaagatcgcgcaggtgtcc
ctgctcgacagccagcagatccggatcaagcgcatctaccccggatcgtcgtatcgggcg
acgacatctgttctcacccttccggttccgcgcaccgcaggggtcggcagcgcccgggtg
cgcgacgtcgaactcatccaggtcgtcgccgacgtgttgctggtgatccacggatccgat
ccgggctcgcgcgacatgcgcggtcccacgatcaccgacgaccacgcggtgtcgtga
DBGET
integrated database retrieval system
