Wenzhouxiangella marina: WM2015_1503
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Entry
WM2015_1503 CDS
T04011
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wma
Wenzhouxiangella marina
Pathway
wma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WM2015_1503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wma03400
]
WM2015_1503
Enzymes [BR:
wma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WM2015_1503
DNA repair and recombination proteins [BR:
wma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WM2015_1503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
AAA_30
UB2H
AAA_25
Ntox15
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AKS41874
UniProt:
A0A0K0XVZ1
LinkDB
All DBs
Position
complement(1818187..1821615)
Genome browser
AA seq
1142 aa
AA seq
DB search
MSQPFSVLNPPRLEAGTTVDWPELSGLGLALALATLARRQGGPLLVAAADGYSARQLRQD
LRQLDAPPVELFPDWEILPYDLYSPHPDLISRRLELLSRLPAMREGIVIAPMAALIQRLA
PPAWIQGQSLKLSVGETLDPGRFRALLNDAGYAASDQVWQPGQFAVRGAVLDLWPMGRPQ
PYRIELFDEEVESIRLFDAESQRSTEKLERIDMLPAREYPFDEDARQDFRRRFRMRFDVD
LRKAVPYVEVGEGIHGQGLEQYLPLFYEDTASLIDYLPREHRLVLLPGIEEAATEFSEQV
QARHEQRGGDRERPVLDPDEVYFPARELLEQLRGDASVRVTRRAPAKATIQPAPSIDLDH
GAEAAIEKLRTLPGRILLAADTAGRRELINEALKGAGVRPKLVESWNAFSSGEDRLALTV
LPVSGGCVLPDREWTILTESELFPGHTRTRQRERRSGQDPESMVKSLADLQAGALVVHLE
HGIGRYLGLEVLEVSDSTAEYLTLEYEGGDKLYVPVTDLHLVSRYTGADPEQVALNRLGS
DQWRKTRRKAAEKVRDVAAELLNLQARRAARQGHAYDLDRGMQARFAAGFEYEETDDQLQ
AIEAVLADLASDQPMDRVVCGDVGFGKTEVALRAAFAVAESGRQVAMLAPTTLLAEQHFR
NFADRFADWPINVALLSRTGGKTTQTVAGLADGTIDVVIGTHRLLSKDIAFKDLGLVIID
EEQRFGVRQKERLKALRAEVDLLTLTATPIPRTLNMAMTGLRELSIIATPPAKRLAVRTF
VSQWDTATIKDAVNREFQRGGQVYFLHNEVKNMARMVEDLQDLFPRARIGMAHGQMAPGE
MERTMRDFYARRINLLVCSTIVENGIDVPTANTIIINRADKFGLAQLHQLRGRVGRSHHL
AYAYLITPPKQALTRDARKRLEAIQTLEELGAGFTLATHDLEIRGAGELLGEDQSGQIEA
IGFSLYSDLLNRAVEALKAGLEPDLDEPLSLTSEVDLHATAMIPPDYLPDVHQRLVLYKR
ITQANTEDKLNELAVEMIDRFGLLPPEVKHLFTTAELRLEARALGMKRLEVGPAGGRVEF
VTKPDIDIGELLKMIQKESHTFELPANDKLRVKGEFETLEERLAMARELLDRLKPKDPSR
PN
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagccgttctccgttctgaatccgccgcgtctcgaggcgggcacgaccgtcgac
tggccggaactgagcggcctggggctcgccctggccctggcgaccctggcgcgtcgccag
ggcggccctctactggtggcggcggccgatggctactcggctcgacagctgcgacaggac
cttcgccagctcgacgcaccacccgtggagctgtttcccgactgggagatcctgccctac
gatctctactccccgcacccggacctgatctcgcggcgtctggagctgttgtctcgtctg
ccggcgatgcgcgagggcatcgtgatcgcgccgatggccgccctgatccagcgcctggcg
ccaccggcctggatccagggtcagagcctgaagctgtcggtcggcgaaaccctcgatccg
gggcgcttccgagccctgctgaacgacgccggctacgccgcttccgaccaggtctggcaa
cccgggcagttcgcggtgcgaggagccgtcctcgacctctggccgatgggccgcccccag
ccctatcgcatcgaactgttcgacgaggaggtcgaatcgatccgcctgttcgacgcggaa
tcgcagcgctcgacggagaagctcgagcgcatcgacatgctcccggcccgcgaatacccc
ttcgacgaggacgcccgccaggacttccggcgccgtttccggatgcgcttcgacgtcgat
ctgcgcaaggccgttccctacgtcgaggtgggcgaaggcattcacggtcagggactcgag
cagtacctgccgctgttctacgaagacaccgcctcgctgatcgactacctgccgcgcgag
catcgcctggtgctgctgccggggatcgaggaagcggccacggagttcagcgagcaggtc
caggcccgccatgaacagcgtggcggcgatcgcgagcgccccgtgctcgatcccgacgaa
gtctactttccggcccgggaactgctagagcaactgcgcggcgacgccagcgtgcgcgtg
acccgacgggcgccggccaaggcgacgatccagcccgccccgtcgatcgatctcgatcac
ggcgccgaggccgcgatcgaaaagctccgcaccctgcccggccgaatcctgctcgccgcc
gacacggccggtcgacgggaactgatcaacgaagccctcaagggcgcgggcgtgcggccg
aagctggtcgagtcctggaacgccttctccagcggcgaggaccgcctggccctgaccgtg
ctgccggtgtccggcggctgcgtcctgcctgatcgagaatggacgatcctgaccgagtcc
gagctcttccccggccatacccgcacccgccagcgcgagcggcgcagcggccaggatccg
gagagcatggtcaagtccctggccgacctccaggccggcgccctggtcgtgcacctggag
cacggcatcggccgctacctcggcctggaagtcctggaggtttcggattcgaccgccgag
tacctgaccctggagtacgagggcggcgacaagctctacgttccggtcacggatctgcac
ctggtcagccgctacaccggcgccgacccggaacaggtggccctgaatcggctgggctcg
gatcaatggcgaaagacccgccgcaaggccgccgaaaaggtccgcgacgtggccgcggag
ctgctcaatctgcaggcccggcgcgcggcccgccagggccacgcttacgacctcgatcgc
ggcatgcaggcccgcttcgctgccggcttcgaatacgaggaaaccgacgaccagctccag
gccatcgaggccgtgctcgccgatctggcctcggaccagccgatggaccgcgtggtctgc
ggcgacgtcggcttcggcaagaccgaggtcgccctgcgggccgcctttgccgtggccgaa
tccggccgccaggtcgccatgctggccccgaccaccctgctggccgaacagcacttccgg
aacttcgccgatcgctttgccgactggccgatcaacgtcgccctgctttcccgcaccggc
ggcaagacgacgcagaccgtggccggcctggccgacggcacgatcgacgtggtcatcggc
acccatcgcctgctctccaaggacatcgccttcaaggacctggggctcgtcatcatcgac
gaggaacagcgcttcggggtgcgccagaaggagcgcctcaaggccctgcgcgccgaggtc
gatctgctgaccctcacggccacgccgattccacgcacgctcaacatggccatgacgggc
ctgcgcgagctgtcgatcatcgccacgcccccggccaagcgcctggccgtgcggaccttc
gtctcgcagtgggacacggccaccatcaaggacgccgtcaaccgtgaattccagcgcggt
ggccaggtctacttcctgcacaacgaggtcaagaacatggcgcgcatggtggaggacctg
caggatctcttcccccgcgcccgcatcggcatggcccacggccagatggcgcccggcgaa
atggagcgcacgatgcgcgacttctatgcccgacgcatcaacctgctggtctgctccacc
atcgtcgagaacggcatcgatgtgcccacggccaacaccatcatcatcaaccgcgccgac
aagttcggactggcccagctgcaccagctccgcggccgtgtggggcgttcgcatcacctg
gcctatgcctacctgatcacgccgccgaagcaggccctgacccgcgatgcgcgcaagcgc
ctggaagcgatccagaccctcgaagaactcggtgcgggcttcaccctggccacccatgac
ctggagatccgcggcgccggcgagctgctgggtgaggaccagtccggccagatcgaggcg
atcggtttctccctctactccgacctgctcaatcgcgccgtcgaggcgctcaaggccggc
ctcgaaccggacctcgacgaacccctgtccctgaccagcgaagtcgatctgcacgccacg
gcgatgattcccccggactacctgcccgacgtgcaccagcgcctggtcctctacaagcgc
atcacccaggccaataccgaggacaagctcaacgaactggccgtcgaaatgatcgaccgc
ttcggcctgctgccacccgaggtcaagcacctgttcacgaccgcggagcttcgtctggaa
gcgcgtgccctgggcatgaagcgcctggaagtcggcccggcgggcgggcgagtcgaattc
gtgaccaaaccggacatcgacatcggcgagctgttgaagatgatccagaaggaatcccac
accttcgaactgccggccaacgacaagctgcgggtcaagggcgagttcgaaaccctggaa
gagcgcctggccatggcccgggagctccttgatcgactcaaaccaaaggatccgtcgcgc
ccgaattga
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