Woronichinia naegeliana: KA717_13695
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Entry
KA717_13695 CDS
T08482
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
wna
Woronichinia naegeliana
Pathway
wna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KA717_13695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wna03019
]
KA717_13695
03016 Transfer RNA biogenesis [BR:
wna03016
]
KA717_13695
Enzymes [BR:
wna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KA717_13695
Messenger RNA biogenesis [BR:
wna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KA717_13695
Transfer RNA biogenesis [BR:
wna03016
]
Prokaryotic type
tRNA degradation factors
KA717_13695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UXE63564
UniProt:
A0A977PY59
LinkDB
All DBs
Position
complement(2663577..2665724)
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AA seq
715 aa
AA seq
DB search
METLQIILDTLERLGILEKERGKYRRLVTENLVEAKLRCSSKGFCFAIQDEEDADDIYVR
ETHLSNAWNGDRVLVKIIKDATRRRSPEGEVALILERANPSLLAQVKKVEQNFRAIPLDD
RLLFQLNLQENGLDLEQAVDHLVHVAVLRYAIGEQPPLGKVTKVLGSDAEAAADTDIVCC
KHDLPSYWSEEAFKEADNLPMGLEQNELKTRQDLRSLKTFTLIDEIERDHLPFIETAFSL
EKTQRHWRLGVHISDVDHYIQPESLLDKLAKKRGTAVYLGDKVCPLFPEAVTRRCSLLMG
EERLALSVFLTLDTMGQVLAFEYQASVIQVDQQFTFSQVQALLAEPENMPSDLADFAEPL
NQLFFTLSPLVQAQRLQRGSFSLQSDTPIAFLDEGRMGAVLISNALPIRAFLTELLILVG
KAVADHLAALDLPALYCTQSQPDWEELTDLLKLATNLGLEVPINLEADVTPQDFQRLSQS
FSKTACIRILNHLLEGSLASAKYSSHPTAHFGLAYGDGYAHCVSPGQRYADLLIQRVLKL
VLTEGRDRRTKQMKTGINLASSDCYGQISWNILPPPLQESLTEEFHHLVPHLNEREKTAE
DAEKDLIGLKKAEKMKERTGQVFRGLITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEY
RARHSCLVGRKNRTAYRLGNEVDVQVKSVDYYRQQIDLVTVGGGAAISGEDWEEE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccctacaaattatcctcgataccctagaaagactagggattttagaaaaggaa
cgggggaaatatcgacggttagtgactgagaatctcgtcgaagcaaaattacgctgttcg
agtaagggcttttgttttgccattcaggatgaagaggatgcggatgatatttatgtccga
gaaacccatctgagtaatgcctggaacggcgatcgcgttttagtcaaaatcattaaagac
gctacccgacgacgctctcctgaaggtgaagtcgctttaattctggaacgagccaatcct
tctctgctggcccaagttaaaaaggtcgaacagaactttcgggctattcctctcgatgat
cgccttttgtttcaattaaatctccaggaaaatggtctggatctggaacaagccgttgat
catttggttcatgttgccgtacttcgttatgcgatcggagaacagccacctctgggtaaa
gtcaccaaagtcctgggcagtgatgccgaagcggctgccgacactgatattgtctgttgc
aaacatgatctaccgagttattggagcgaagaagccttcaaggaagccgataacttacca
atgggtctagaacagaatgaattaaaaacccgtcaggatctacgttctctcaaaaccttt
actctcattgatgagatcgagcgggatcatcttccctttatcgaaacggctttcagtctg
gaaaaaacacaacggcactggcgattgggcgttcatattagtgatgtcgatcactacatt
caaccagagagtctgctcgataaattggccaaaaaacgtggcactgctgtttacctgggt
gataaggtctgtccccttttcccggaagccgttacccgtcgttgttctttactgatgggt
gaagaacgtctggctctttcagtctttttaaccctggatacgatgggacaggttttagcg
tttgaatatcaagccagtgtcattcaagtggatcaacaattcaccttttcccaggtacaa
gctctgctggcggaaccggaaaatatgccttccgacctggccgattttgccgagccgtta
aatcaactcttttttacccttagtcctttagtccaagctcaacggttacaacgcggtagt
ttttctttgcagtccgataccccgatcgcctttttagatgaaggacgtatgggcgcggtg
ttgatctctaatgccttaccaatccgtgcttttttgacggaactgttaattttagtgggg
aaagcggtggcggatcacctagcggccttggatttgccagccttgtattgtactcagtcc
caacccgattgggaggaattaaccgatctcttaaaactagccactaatctaggcttggaa
gttcccattaatttggaagcagatgtcactccccaggatttccaacgcttaagtcagtcc
ttttctaaaactgcctgcatccgtattttaaatcatttgctggaagggtctttagcctcg
gcaaaatatagcagtcatcccactgcccattttggtttggcctatggggatggttatgcc
cactgcgtttctcctggtcaacgatatgctgatttactaatacaacgggtcttaaaatta
gtgcttacggaaggccgcgatcgccgcaccaaacaaatgaaaaccggcatcaatttagcc
agtagcgactgttatggccaaattagctggaatatcttacctccccctcttcaagaaagc
ctcaccgaagaatttcaccacctggttccccatctcaatgaacgagaaaaaaccgcagag
gatgcggaaaaagatttaattggcttgaaaaaagccgaaaaaatgaaagaacgaaccggc
caagtgttccgaggcttaattacgggagtgcagtcctacggcttttttgtggaaatcgaa
gatctcttagtggaaggtttggttcacgttagttccctcaaggatgattggtacgagtat
cgggcccgtcatagttgtctggtcggtcgcaaaaatcgcactgcctaccgattaggcaat
gaagtcgatgttcaagttaagagcgtggactactatcgtcaacaaattgatctggtcact
gttggcggcggggctgctattagtggtgaagattgggaagaggaataa
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