Woronichinia naegeliana: KA717_23030
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Entry
KA717_23030 CDS
T08482
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wna
Woronichinia naegeliana
Pathway
wna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KA717_23030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wna03400
]
KA717_23030 (mfd)
Enzymes [BR:
wna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KA717_23030 (mfd)
DNA repair and recombination proteins [BR:
wna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KA717_23030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
UXE58864
UniProt:
A0A977KSE2
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All DBs
Position
4553442..4556912
Genome browser
AA seq
1156 aa
AA seq
DB search
MTFSSVIRHLEKLPLTAELRQKLEKTRSLSLSGISRLPKGLIASTLAQSLNQNLVVVTAT
LEEAGRWAAQLEIMGWPSVNFYPTSEASPYEPANQESEMVWGQMQVLANLGQTRAGFVII
TTEKALQPHLPPLEVFQSYCLNLRVGAVHSSKLLDQTLARLGYERVASVETEGQWSRRGD
IVDIFPVSAELPVRLEWFDDELEKLREFDPATQRSLDNIEKLILTPTSFDWITSQSVEKE
ILEPYLSTREKEQLQTEIFSEGMQRFLGFAFEQPASLKDYLPEQTIWVFDEVEQCESHSD
RWCELVEQDWVGLGDVNFPKIHRAFQTSLATIKSQFLTLYFSELTDATDKESLDLSSRPI
PTTPHQFAKLSEILRGKREIYHGMTLERYATWLISAQPSRTVSLLQEHDCVVQFIPNPRD
YPAIEKFQIQKTAIALKYAGIAELEGFILPTFRLVIVTDRELFGQQSLATPEYIRKRRRA
ASKQVDLNKLSPGDFIVHKSHGIGKFLKLEALETREYLVIQYADGILRVPADNFDSLSRY
RHTGSEAPQLHKMGGKVWEATKNKVRKAIKKLAVDLLNLYAKRAQQNGYTFPPDTPWQSE
LEDSFPYQATPDQLKAVQDVKRDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQ
VALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTASEKKEILERLASGELDILVGTQ
GILGKGVKFKNLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIR
EMSLITTPPPSRRPIKTHLSSYHPEVIRTAIRNELDRGGQVFYVVPRIEGIEEVGGQLRE
MVPSARLAIAHGQMDESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDSQKF
GLAQLYQLRGRVGRAGIQAHAWLLYPSKRELTETARQRLKALQEFSQLGSGYQLATRDME
IRGVGSLLGAEQSGQMEAIGFEFYMEMLQEAIREIQGQEIPKVEETQIDLQITALIPSDY
IPDLEQKMAAYRQITAVEFSKELALIAADWSDRYGAIPSPVEQLFKVIELKQLARSLGFS
RIKVEGKQNIVLETPMEEPAWNLLAENLPNHLRSRFVYSPKKVIVRGLGLVKPKQQLENL
IEWFSKMKAALPDAKI
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttcgtctgtaattcgccatcttgaaaaattgccattgacggcagaactacgc
caaaaactggaaaaaacgcgatcgctttccctcagtgggatttctcgtttgccgaagggg
ttaattgcttcaacgttggctcaatccctaaatcagaatttagtcgtggtgacagcaacc
ttagaagaagcagggcgttgggcagcgcaattggaaatcatgggttggccaagtgtcaat
ttctaccccacctcagaagcctctccctatgaaccggccaatcaagagtcggaaatggtt
tggggccagatgcaggttttagccaatttgggacagacccgtgcagggttcgtcatcatt
accaccgaaaaggctttgcagccccatcttccgcccctagaggtttttcaatcttactgt
ctcaatttgcgggtgggagcagtccacagtagtaaattattggatcaaaccttagcgaga
ttgggttatgagcgggttgcctctgtggaaacggaaggccagtggagccgacgaggggat
attgtcgatatttttccggtttcagccgaattgccagtgcgcttggaatggtttgatgat
gagttggaaaagttgcgtgaatttgatccggcaactcagcgatccctggacaatattgag
aagttaattttaacccctacgagcttcgactggatcacctctcaatcagtcgaaaaagaa
attcttgaaccctatttatcgacacgcgaaaaagagcaattacaaaccgaaattttctca
gagggaatgcaacgatttttgggctttgcctttgaacaaccggcttctttaaaggattat
ttaccagaacagacgatttgggtttttgatgaagttgagcaatgtgaaagtcatagtgat
cgctggtgtgagttagtggaacaggattgggtcggtttaggcgatgtcaatttccctaaa
attcatcgagcttttcaaacctctttggctactattaaaagtcaatttttaaccctctat
ttttcggaattaaccgatgcaacagacaaggaaagtttagatctttctagtcgtccgatt
ccgaccacgcctcaccaatttgccaaactcagtgaaattttacgtggtaaacgggaaatc
tatcatgggatgaccttagaacgctatgcgacttggttaatttcagcccaaccgtcacgt
actgtttccctcttacaagaacatgattgcgttgtacaatttattcccaatccgagggac
tatccggctattgaaaaattccagatccaaaaaacagcgatcgctttaaagtatgcaggg
attgcggaattagagggttttatccttccgacttttcgtttagtgattgtcacggatcga
gaattatttgggcaacaatccttagctaccccagaatatattcgcaaacgtcgtcgagcg
gcatctaaacaggttgatcttaataaactttcgcctggtgattttattgttcataaaagt
catgggattggtaaatttttaaaattagaagccttagaaacccgcgagtatttagtcatt
caatatgcggatggtattttacgagttccggcggataattttgatagtttatcgcgctat
cgtcatacgggaagtgaagccccccaactccataaaatggggggtaaagtttgggaggca
accaaaaataaagttcgtaaagctatcaaaaaattagcggtagatttgcttaatctttat
gctaaacgcgcccaacaaaatggttacacctttccacctgatacgccttggcaaagcgag
ttagaagattcctttccctatcaagcaacccccgatcaacttaaggccgttcaagatgtt
aaacgggatttggaaagcgatcgcccgatggatagattggtctgtggcgatgtgggtttt
ggtaaaacagaagtggcagtgcgggctatctttaaggctgtcaccagtggtcataaacaa
gtggccttattagctcctacaaccattttaacgcaacaacattaccatactttaaaagaa
cgttttgccccctatccgattaatattggcttattaaatcgctttcggactgcttctgag
aaaaaagagattttagaaagattagcatcgggagaactcgacattttagtaggaactcaa
ggcattttaggcaagggggtaaaattcaaaaatttaggtttattagttattgatgaagaa
caacgttttggggttaatcaaaaagaaaaaattaaaaccttgaaaactgaagtggatgtg
ttaaccctcacggctacccccattcctcgcacgctttatatgtccttatcgggcattcga
gagatgagtttaattaccacaccaccaccctctcgtcgtcccattaaaacccatttatct
tcctatcatcctgaggtaattcgcaccgccattcggaatgaattagatcggggtggacag
gttttttatgtagttccccgcattgaaggcattgaagaagtggggggacaattacgcgaa
atggttcctagtgcgaggctggcgatcgcccatggacaaatggatgaatcggagttagaa
agtacgatgttagcctttaacgatggtgaggccgatattttagtttgtacaaccattatt
gaggcgggtttagatattcccagggtgaatacgattattgttgaagattctcaaaaattt
gggttagcgcaactttaccaattacgaggacgagtgggacgggccgggattcaggcacat
gcttggttactgtatcccagtaaacgagagttaacagaaacggcacggcaacgtttaaaa
gcattacaggaattttctcagttaggttcgggttatcaactggcgactcgtgatatggaa
attcggggtgtgggtagtcttttaggggccgaacaatcgggacaaatggaagcgatcggg
tttgaattttatatggaaatgttacaggaagctattagggaaattcaaggtcaagaaatt
cctaaagtagaggaaacacaaatcgatctacaaattacggccttaattccctccgattat
attcccgatctagagcaaaaaatggctgcttatcgacaaattacagcggtagaattttct
aaggaattagctttgattgctgccgattggagcgatcgctatggagctattccctcccct
gtagagcaattatttaaggtcattgagttaaagcagttagctcgttctcttggcttttca
cgcattaaagttgagggtaagcaaaatattgttttggaaacaccaatggaggaaccggct
tggaatttactcgctgagaatctccctaatcatctgcgatcgcgttttgtctatagtcct
aaaaaggtcattgtgcggggtttaggtttagttaagccgaagcaacaattagaaaattta
attgaatggtttagtaaaatgaaagctgctttacctgatgctaaaatttaa
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