Wallemia mellicola: WALSEDRAFT_59662
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Entry
WALSEDRAFT_59662 CDS
T03142
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
wse
Wallemia mellicola
Pathway
wse03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
wse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WALSEDRAFT_59662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wse03400
]
WALSEDRAFT_59662
Enzymes [BR:
wse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WALSEDRAFT_59662
DNA repair and recombination proteins [BR:
wse03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
WALSEDRAFT_59662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT_2
DNA_ligase_A_C
BRCT
Motif
Other DBs
NCBI-GeneID:
18473483
NCBI-ProteinID:
XP_006956927
JGI:
Walse1_59662
UniProt:
I4YFY6
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MKFNQLVSFFDNISTEKDTLKRSRKLEKLFDYHRKQFGNDFYNLLRLMIPERERERSMFG
IKEAVLAKIYVELLALSKDHKDGHRLLSWKAPTAGNFVSGDFASVLVDVMKNRVSYERKS
EFTIDEVNDKLDQLSRAKNFIQKKDIMKEFARNCDTTEQFWLVRILLKNLKISIRERSIL
SHFHRDAYSLFEVTTDLRTVAYKLYDPSIRLHDNDSSVQLFQVFQPMLCKRNVIPQIIKK
MPKSVPFVVEEKMDGERIQLHKKGTKYKYWSRNAKDYTYLYGENPKEGSFTPHIHHSFDD
RVDEIVLDGEMLAYSAAVDTILPFGTLKKAAKGDINIHPVFIVFDVLWVNGKDISKYPFK
ERQKVGKTVFNPISTRIEHVSRWEATQADELKQSLERIIISKGEGLVVKSPLSLYEYGGR
SDQWIKLKPDYFDEMSETADLLVIGGNWSASRNGTISTLYCALVDDRHETDEPDFLTFTR
VGTGYTAMDLELINQHFRKSETRKYTPASVYPGIEIGNETPDIIIDPKDSFVVEIKASDI
NRSVNYPCGYTYRFPRFKRLRLDKGNGRENPVDPDNMFKYSDMIAMRDGIQSSRRKQTED
KIREKKRAQPTKKKKQVISSRAVANVRAEKDNVRSNLFEGCAFRILNGTNDLEVSDLAVL
VSERKGMILSKIPNDEDCPEPLLVVAGKPTAVQVTQLMKTQKRSILSANWLLDCVKHNCI
IPLEGKDGESQWVFECATDRDTILNTLRPFFVTPEGRNLPGVSQGQIDEDAVGEINELKF
AEEPTLHSEADSAQDKDFDSDTATENERNESDNDIDIDDTIQEEAAEEMANTKADVSSPL
QQTQPEYKQTSTTRTATRRKANKTDEFDSSDESDDNKSIPTATQKQASPEHVKESQKIST
PSFIKQEVKEENVDENATSHNEKNLATSSPTTKRQLHETRVVSKDEKRRSHDNAFDSGSD
SDAHHEDGPVKKVKHEAEPHELKGQDAEVESIKHYEKSSQEQSQDLDNTHTSVPIEEVSI
EGSDKPENPLLNVVVYIDDYENAIENDLFPRPSITTEIDWSVVKDRITNLGGKIGELDDD
MLTHIVIDSRDKARVEELFDRTKQPRYRKLVSIDWVNSCYENKSFVDESLYKITL
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaaccaattggtatctttctttgataatatatctacagagaaggatactctt
aagcgtagtagaaagttagaaaagctattcgattatcatcgcaaacaatttggcaatgat
ttctacaatctactcagattaatgatacctgaacgcgaaagggagaggtctatgttcggt
ataaaagaagctgtcttagctaagatatacgtagaactactcgccctatctaaggatcat
aaagacggccataggttactcagttggaaggcacccactgctggtaacttcgttagcggt
gattttgccagtgttcttgttgacgtcatgaagaacagagtcagttatgagcgcaaatct
gaattcacgattgatgaagtcaatgataagcttgatcagctatccagggcgaagaacttc
atacaaaagaaagacattatgaaggaatttgcaagaaattgtgacacgactgaacagttc
tggctggtgagaattcttttaaagaatctcaaaataagcattcgagaacgctccatattg
tcgcattttcatcgtgacgcctatagcttgtttgaagtcacgactgatcttcgcaccgtg
gcttataaactatatgatccatccatcagattacatgataatgattcaagtgtgcagcta
tttcaggtcttccaaccaatgttatgcaagcgtaacgttattcctcaaatcataaagaag
atgcccaaaagtgtaccttttgtagtcgaggagaagatggatggtgaacgcattcagtta
cacaagaaaggtaccaaatacaagtattggagcaggaatgctaaagactacacatacttg
tatggtgaaaaccccaaagaaggctcttttacaccacatattcatcactcattcgacgat
cgtgttgacgagattgttctcgacggtgaaatgttggcatattcggcagcagtcgacacg
atactaccatttggtacactcaagaaagctgcaaaaggcgatattaatatacatccagtt
ttcatagtcttcgacgtactttgggtcaatggcaaagacatatctaaatacccctttaag
gagcgccaaaaggttggaaagaccgtatttaatccaatttctacaagaatagaacatgtc
tccagatgggaagccacccaagctgatgaattgaagcaatcactcgaacgtatcatcata
tcaaagggtgaagggctagtggttaaatcaccactatcattgtatgaatatggcggacgt
tcagaccaatggatcaagttaaaaccagactattttgatgaaatgtcagaaactgctgat
cttctcgttataggagggaactggtctgcgtccaggaatggtacgatatcaactctttat
tgcgcattggtcgatgatagacatgaaacagatgaaccagacttccttaccttcacccgt
gtcggtacgggatacactgcgatggatctggaactaattaatcagcattttcgcaaaagt
gaaacacggaaatatacccctgcatctgtataccctggtatcgagattggtaatgaaacg
ccagacattattattgaccctaaagattccttcgttgtcgaaatcaaagctagtgatatc
aaccgatctgtaaattatccttgtggatacacgtacagattccctcgctttaagcgtctc
agattagacaaaggcaatgggcgcgagaatccagttgatcctgacaatatgtttaagtat
agtgatatgatcgctatgagagatggcatacaatcgtcgcgtaggaagcaaacagaagat
aaaataagggaaaaaaagcgagctcagccgacaaagaagaaaaaacaggtcatcagttct
cgtgctgttgctaacgtgcgggccgaaaaagacaacgtacgaagcaacctgtttgaaggc
tgcgctttccgtattctcaatggcacaaatgatctcgaagtttcagatctcgccgtcctt
gtctcagaaaggaaaggtatgatattatcaaagatacccaatgatgaggattgcccggaa
ccactactggtagtcgctgggaaacctacagctgtacaggttacacagttaatgaagacc
caaaaacgctctattctatctgctaattggctacttgattgtgttaagcacaactgtatc
atacctttggaaggtaaagatggggaatcccaatgggtgttcgaatgtgcaactgataga
gatacaatattgaacactctccgacccttctttgtcacacctgaaggtagaaatcttccc
ggagtgtctcaaggtcaaatagatgaagacgccgttggcgaaattaacgagttgaaattc
gcggaagagcccacattacatagtgaggctgattccgcgcaagacaaggactttgattcc
gatactgccacagaaaatgagagaaacgaaagtgacaatgatattgatatagatgatacg
atacaggaagaagcggctgaagagatggcaaacactaaggcagatgtatcgtcacccttg
caacaaacacaaccagagtataaacagacgtctacaacacgtacagcgacgagacgcaaa
gctaacaaaacggacgaatttgattcgtctgatgagagtgatgataacaagtcaatacct
acggcaacccagaaacaagcctctcctgagcatgtgaaagaatctcaaaagataagtaca
cctagttttataaagcaagaagtcaaagaagagaatgtcgatgaaaatgccacatcacat
aatgaaaaaaatctagcaacctcaagtccaactacaaagcggcaattgcacgaaacgagg
gtggtctcgaaagatgaaaagaggcggagtcatgataatgcttttgacagtggttctgat
agtgatgcacatcatgaagacggacctgtcaagaaagtcaaacacgaagctgaaccacat
gaattgaaaggtcaggatgcagaggtcgagtctattaaacactacgaaaagtcatcgcaa
gagcagtcacaggatcttgataatacgcatacctctgttccaattgaagaagtatcaata
gagggtagcgacaaacctgagaaccctcttttgaatgttgttgtttacattgatgattac
gagaatgcgattgaaaatgatctatttccaaggccatccataacgactgagatagactgg
tcggtagttaaggaccggataacaaacctcggtggtaaaattggagaattagatgatgac
atgttgacgcatattgtgatcgactcaagagacaaggcccgagttgaggagttgttcgac
aggactaaacaaccaagataccggaaactagttagtattgattgggttaatagctgctac
gagaataagagctttgttgatgaatcattgtataaaataacgttgtga
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