KEGG   Xanthomonas sp. GW: HEP73_00038
Entry
HEP73_00038       CDS       T08755                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xag  Xanthomonas sp. GW
Pathway
xag03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HEP73_00038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xag03400]
    HEP73_00038
Enzymes [BR:xag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HEP73_00038
DNA repair and recombination proteins [BR:xag03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HEP73_00038
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M SPOR mRNA_cap_enzyme DNA_primase_S
Other DBs
NCBI-ProteinID: QNH19152
UniProt: A0A7G7SQY2
LinkDB
Position
37780..40524
AA seq 914 aa
MTLREYARKRRFGATPEPADDSVSTPSRRPIFVVQLHQASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYAGFAGDIPEGHYGAGHVDVFDHGTWSCDGEPLAAIAA
GKLDFVLHGERLNGNWKLVRTALRGKQPQWLLIKRDDAFAADRDADDLLQEPVSAPAPKR
AAKAAKPTKAGKASKRARDAATAKPAAAGAAAPSAARPRRSDAAWRKRALALDGARDRPC
PPGERAQLTLLRDRAPDGAQWLHEIKWDGYRLLADLDAGQATLRSRNDQAWTETFPEVAH
AVQALPVSEARLDGELVVLDADGRSDFSALQRVIEGSSKQPLRYLVFDLLGVAGVDLREV
PLLQRKQLLRALLGDTPGVLAYSDHVLGHGPEVFAAAAAKGYEGVVSKRADARYHGGRGG
DWVKTKHENSDDFVIVGYTDPKGARSGFGSLLLAQRSDGGLRYVGRVGTGFDESGLRRLL
AQLQALHSEQAVVDIPAHAPFPRRSVHWVRPQLVAEVAFRGWAKEGLLRQAAFKRLREDK
PLQDLGGDRAPAPAAAPGSHVVAARAAASAKKTAPAARGPATPAKRSTSKGDATKNGAAK
RKPATAKSAPRASTAARKVASSASADADAAAVVITHPERVVYPGAGISKGEVAEYYRAIA
PWLLQEVAGRPLSLLRCPDGAGGECFFQKHNNRALGEHVHAIALKQKSGTEDYLYIDDLA
GLLELVQMNTLELHPWGSTVDDPEHPDRLVFDLDPGEGVSWTQIKAAAREIRIRLRETGL
ESFVRLSGGKGLHVVVPIVPGADWEQARDFCEAFAQALAGSAPERYVATMSKAKRNGVIF
VDWLRNGRGNTSVCSWSLRAREHATVAVPLRWEELARIASPQAFPLAKALQRAARLREHP
WKEMETLRQRLPGS
NT seq 2745 nt   +upstreamnt  +downstreamnt
atgacgctgcgcgagtacgcccgcaaacgccgcttcggcgcaaccccggaaccggccgac
gacagcgtctcgacgccgtcgcggcgcccgatcttcgtggtgcagctgcaccaagccagt
tcgcgccactacgattttcgcctggaagccgacggcgtgctgaagagttgggcggtgccg
aaggggccgtcgctgcgggtcggcgaaaagcggctggcggtgcaggtggaagaccacccg
ctgtcctatgccggcttcgccggcgatattcccgagggccattacggtgccggccatgtc
gatgtgttcgaccacggcacctggtcgtgcgacggcgaaccgctggccgcgatcgccgcc
ggcaagctggatttcgtgctgcacggcgagcgcctcaacggcaactggaaactggtgcgc
accgcgttgcgcggcaagcagccgcagtggctgctgatcaagcgcgacgacgcgttcgcc
gccgatcgcgatgccgacgacctgctgcaggagccggtctccgcgcctgcgccgaagcgc
gcggccaaagccgccaagcccaccaaggccggcaaggcctccaagcgtgcgcgcgatgca
gccacggccaagcctgccgccgctggcgctgcggctccgtcggccgcgcggccgcggcgc
agcgatgcggcctggcgcaagcgcgcgctggcgctggacggtgcgcgcgatcggccgtgt
ccgccaggcgagcgcgcgcagctgacgctgctgcgcgaccgcgcccccgacggtgcgcaa
tggctgcacgagatcaagtgggacggctatcgcctgctcgccgatctcgatgccggccag
gcgacgctgcgctcgcgcaacgatcaggcctggaccgagaccttccccgaggtcgcgcac
gcggtgcaggccttgccggtgagcgaggcgcggctggatggcgaactggtggtgctcgat
gccgacggccgcagcgatttctccgccttgcaacgggtcatcgagggcagctccaagcag
ccgctgcgctacctggtgttcgacctgctcggcgtggccggcgtggacctgcgcgaggtc
ccgctgctgcaacgcaagcaactgttgcgcgcgctgctcggcgacacgccgggcgtgctg
gcctacagcgaccatgtgctcggccatggcccggaggtgttcgccgcggcggcggcgaag
ggctacgaaggcgtagtcagcaagcgcgcggacgcgcgctatcacggcggccgcggcggc
gactgggtcaagaccaagcacgagaacagcgacgatttcgtcatcgtcggctacaccgat
cccaagggcgcgcgcagcggcttcggttccttgctgctggcgcagcgcagcgatggcggc
ttgcgctatgtcggccgggtcggcaccggtttcgacgaatcgggcctgcggcgcttgctt
gcgcagctgcaggcgctgcacagcgagcaggcggtggtggatattcccgcgcatgcgcca
ttcccgcgacgcagcgtgcactgggtgcggccgcaactggtggccgaagtcgccttccgc
ggctgggccaaggaaggattgttgcgccaggccgcattcaagcgcctgcgcgaggacaag
ccgctgcaggatctcggcggcgatcgtgcgccggcaccggcggcagccccaggcagccat
gtcgtggcggcgcgcgctgcggcatcggcgaagaagaccgcgccggccgcgcgcgggccg
gccacgccggcaaaacgcagcacatcgaaaggcgatgctacgaaaaacggtgccgccaag
cgcaaaccggcaactgccaagtccgcgccgcgcgcaagcaccgcggcgcggaaggtcgct
tcctccgccagcgccgacgccgatgccgcggcggtcgtcatcacccaccccgagcgcgtg
gtgtacccgggtgccggcatcagcaagggcgaggtcgccgagtactaccgtgccatcgcg
ccatggttgctgcaggaagtcgctgggcgtccgctgtcgttgctgcgctgccccgatggc
gccggcggcgaatgcttcttccagaagcacaacaaccgcgcactcggcgagcatgtacac
gcgatcgcactgaagcagaagagcggcaccgaggactacctgtacatcgacgatctcgcc
ggcctgctggagctggtgcagatgaacaccctggagctgcatccctgggggtcgaccgtg
gatgatcccgagcatcccgaccggctggtgttcgacctggacccgggcgagggcgtgagc
tggacgcagatcaaggccgcggcgcgcgagatccgcatccgcctgcgcgagaccggactg
gaaagcttcgtgcgcctgtccggcggcaagggcctgcacgtggtggtgccgatcgtgcct
ggcgcggattgggagcaggcccgcgatttctgcgaagccttcgcccaggcgctggccggc
tctgcgcccgagcgctacgtggccacgatgagcaaggccaagcgcaatggagtgatcttc
gtcgattggctgcgcaacggccgcggcaacaccagcgtgtgctcgtggtcgctgcgcgcg
cgcgagcacgccaccgtggcggtgccgctgcgctgggaggaactggcgcggatcgcctcg
ccgcaggcgttcccgctggccaaggcgctgcagcgcgccgcgcgcctgcgcgagcatccg
tggaaggagatggagacgttgcggcagcggctgcccggaagctga

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