Xanthomonas sp. GW: HEP73_00038
Help
Entry
HEP73_00038 CDS
T08755
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xag
Xanthomonas sp. GW
Pathway
xag03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HEP73_00038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xag03400
]
HEP73_00038
Enzymes [BR:
xag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HEP73_00038
DNA repair and recombination proteins [BR:
xag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HEP73_00038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
SPOR
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNH19152
UniProt:
A0A7G7SQY2
LinkDB
All DBs
Position
37780..40524
Genome browser
AA seq
914 aa
AA seq
DB search
MTLREYARKRRFGATPEPADDSVSTPSRRPIFVVQLHQASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYAGFAGDIPEGHYGAGHVDVFDHGTWSCDGEPLAAIAA
GKLDFVLHGERLNGNWKLVRTALRGKQPQWLLIKRDDAFAADRDADDLLQEPVSAPAPKR
AAKAAKPTKAGKASKRARDAATAKPAAAGAAAPSAARPRRSDAAWRKRALALDGARDRPC
PPGERAQLTLLRDRAPDGAQWLHEIKWDGYRLLADLDAGQATLRSRNDQAWTETFPEVAH
AVQALPVSEARLDGELVVLDADGRSDFSALQRVIEGSSKQPLRYLVFDLLGVAGVDLREV
PLLQRKQLLRALLGDTPGVLAYSDHVLGHGPEVFAAAAAKGYEGVVSKRADARYHGGRGG
DWVKTKHENSDDFVIVGYTDPKGARSGFGSLLLAQRSDGGLRYVGRVGTGFDESGLRRLL
AQLQALHSEQAVVDIPAHAPFPRRSVHWVRPQLVAEVAFRGWAKEGLLRQAAFKRLREDK
PLQDLGGDRAPAPAAAPGSHVVAARAAASAKKTAPAARGPATPAKRSTSKGDATKNGAAK
RKPATAKSAPRASTAARKVASSASADADAAAVVITHPERVVYPGAGISKGEVAEYYRAIA
PWLLQEVAGRPLSLLRCPDGAGGECFFQKHNNRALGEHVHAIALKQKSGTEDYLYIDDLA
GLLELVQMNTLELHPWGSTVDDPEHPDRLVFDLDPGEGVSWTQIKAAAREIRIRLRETGL
ESFVRLSGGKGLHVVVPIVPGADWEQARDFCEAFAQALAGSAPERYVATMSKAKRNGVIF
VDWLRNGRGNTSVCSWSLRAREHATVAVPLRWEELARIASPQAFPLAKALQRAARLREHP
WKEMETLRQRLPGS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcgcgagtacgcccgcaaacgccgcttcggcgcaaccccggaaccggccgac
gacagcgtctcgacgccgtcgcggcgcccgatcttcgtggtgcagctgcaccaagccagt
tcgcgccactacgattttcgcctggaagccgacggcgtgctgaagagttgggcggtgccg
aaggggccgtcgctgcgggtcggcgaaaagcggctggcggtgcaggtggaagaccacccg
ctgtcctatgccggcttcgccggcgatattcccgagggccattacggtgccggccatgtc
gatgtgttcgaccacggcacctggtcgtgcgacggcgaaccgctggccgcgatcgccgcc
ggcaagctggatttcgtgctgcacggcgagcgcctcaacggcaactggaaactggtgcgc
accgcgttgcgcggcaagcagccgcagtggctgctgatcaagcgcgacgacgcgttcgcc
gccgatcgcgatgccgacgacctgctgcaggagccggtctccgcgcctgcgccgaagcgc
gcggccaaagccgccaagcccaccaaggccggcaaggcctccaagcgtgcgcgcgatgca
gccacggccaagcctgccgccgctggcgctgcggctccgtcggccgcgcggccgcggcgc
agcgatgcggcctggcgcaagcgcgcgctggcgctggacggtgcgcgcgatcggccgtgt
ccgccaggcgagcgcgcgcagctgacgctgctgcgcgaccgcgcccccgacggtgcgcaa
tggctgcacgagatcaagtgggacggctatcgcctgctcgccgatctcgatgccggccag
gcgacgctgcgctcgcgcaacgatcaggcctggaccgagaccttccccgaggtcgcgcac
gcggtgcaggccttgccggtgagcgaggcgcggctggatggcgaactggtggtgctcgat
gccgacggccgcagcgatttctccgccttgcaacgggtcatcgagggcagctccaagcag
ccgctgcgctacctggtgttcgacctgctcggcgtggccggcgtggacctgcgcgaggtc
ccgctgctgcaacgcaagcaactgttgcgcgcgctgctcggcgacacgccgggcgtgctg
gcctacagcgaccatgtgctcggccatggcccggaggtgttcgccgcggcggcggcgaag
ggctacgaaggcgtagtcagcaagcgcgcggacgcgcgctatcacggcggccgcggcggc
gactgggtcaagaccaagcacgagaacagcgacgatttcgtcatcgtcggctacaccgat
cccaagggcgcgcgcagcggcttcggttccttgctgctggcgcagcgcagcgatggcggc
ttgcgctatgtcggccgggtcggcaccggtttcgacgaatcgggcctgcggcgcttgctt
gcgcagctgcaggcgctgcacagcgagcaggcggtggtggatattcccgcgcatgcgcca
ttcccgcgacgcagcgtgcactgggtgcggccgcaactggtggccgaagtcgccttccgc
ggctgggccaaggaaggattgttgcgccaggccgcattcaagcgcctgcgcgaggacaag
ccgctgcaggatctcggcggcgatcgtgcgccggcaccggcggcagccccaggcagccat
gtcgtggcggcgcgcgctgcggcatcggcgaagaagaccgcgccggccgcgcgcgggccg
gccacgccggcaaaacgcagcacatcgaaaggcgatgctacgaaaaacggtgccgccaag
cgcaaaccggcaactgccaagtccgcgccgcgcgcaagcaccgcggcgcggaaggtcgct
tcctccgccagcgccgacgccgatgccgcggcggtcgtcatcacccaccccgagcgcgtg
gtgtacccgggtgccggcatcagcaagggcgaggtcgccgagtactaccgtgccatcgcg
ccatggttgctgcaggaagtcgctgggcgtccgctgtcgttgctgcgctgccccgatggc
gccggcggcgaatgcttcttccagaagcacaacaaccgcgcactcggcgagcatgtacac
gcgatcgcactgaagcagaagagcggcaccgaggactacctgtacatcgacgatctcgcc
ggcctgctggagctggtgcagatgaacaccctggagctgcatccctgggggtcgaccgtg
gatgatcccgagcatcccgaccggctggtgttcgacctggacccgggcgagggcgtgagc
tggacgcagatcaaggccgcggcgcgcgagatccgcatccgcctgcgcgagaccggactg
gaaagcttcgtgcgcctgtccggcggcaagggcctgcacgtggtggtgccgatcgtgcct
ggcgcggattgggagcaggcccgcgatttctgcgaagccttcgcccaggcgctggccggc
tctgcgcccgagcgctacgtggccacgatgagcaaggccaagcgcaatggagtgatcttc
gtcgattggctgcgcaacggccgcggcaacaccagcgtgtgctcgtggtcgctgcgcgcg
cgcgagcacgccaccgtggcggtgccgctgcgctgggaggaactggcgcggatcgcctcg
ccgcaggcgttcccgctggccaaggcgctgcagcgcgccgcgcgcctgcgcgagcatccg
tggaaggagatggagacgttgcggcagcggctgcccggaagctga
DBGET
integrated database retrieval system