Xanthomonas albilineans: XALC_2052
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Entry
XALC_2052 CDS
T01160
Symbol
deaD
Name
(GenBank) probable atp-dependent rna helicase (cold-shock dead box protein)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XALC_2052 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xal03019
]
XALC_2052 (deaD)
03009 Ribosome biogenesis [BR:
xal03009
]
XALC_2052 (deaD)
Enzymes [BR:
xal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XALC_2052 (deaD)
Messenger RNA biogenesis [BR:
xal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XALC_2052 (deaD)
Ribosome biogenesis [BR:
xal03009
]
Prokaryotic type
rRNA helicases
XALC_2052 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CBA16536
UniProt:
D2U8X0
LinkDB
All DBs
Position
complement(2417635..2419608)
Genome browser
AA seq
657 aa
AA seq
DB search
MSQDIPAPLLFADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFAQRKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PQSRQVALFSATMPAAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML
RAIERATRQPIEEMQLPSVDAVNDQRVSRFMERISETIAAGGIDSYRELLQRFEAEKNIP
MVEVAAALARLLQGDTPLLLAPDRPRAAPQGERFERPGGERRERGERPERAKFEQKFERE
ARPSRRDEGERAPRPAPAQGGDFDYHRDVGSFEAPRRDKAPKAPRGAPDVGMETYRIEVG
HQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSILDLPVEMPRELLAHLKKVWVSGQQ
LQMRKLDDATSGGAPFKPKFARGGKPGGKPNAAAARPPGRFGDRPGERPPRKGPPKR
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatatccccgcgccgctgctgttcgcagatctcggcctctgttctgctgtg
atgaaggcggtcgccgagatcggttacgagtcgccctcgccgatccaggcggccaccatc
ccggccctgctgaccgggcgcgacctgctcggccaggcccagacgggcaccggcaaaacc
gctgcattcgcgctgccgatcctgtcgcggctggacttcgcccagcgcaagccgcaggca
ctggtgctggcgcccacgcgggaactggcaatccaggtcgccgaggcgtttcaccgctac
gctgctgccattcccggcttccaggtattgccggtgtacggcggccagccctatgtgcag
cagttgtcggcgctcaagcgtggcgtgcatgtggtggtggggaccccgggacgggtcatc
gaccatctcgaccgcggcaccctggacctgtccgagttgaagacgctggtcctcgacgag
gctgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgttgaagaagctg
ccgcaatcgcgtcaggtagcgctgttctcggcgaccatgccggcggcgatcaagcggatc
gcgcagacgtatctcaacgatccggccgaagtcatcattgcctccaagaccaccacctct
gcgaacattcgccagcgctactgggcggtgagcgggttgcacaagctcgatgcgctgacc
cggattctggaggtggagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggt
actgacgaactggcgcaaaagctgcaggcacgcggtctggcggcggcggcgatcaacggc
gacatccagcaggcgcagcgcgagcgggtgatccagcaactcaaggatggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgtggcctggatgtggagcgcatcagccatgtg
ttgaactacgatatcccttacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgcgccgggcgcagcggcgaggcgatcctgttcgtcagcccgcgcgagcgcggcatgttg
cgtgcgatcgagcgcgccacccgccagccgatcgaagagatgcaattgccgagcgtggac
gcggtcaacgatcagcgtgtgagccgcttcatggagcggatcagcgagaccatcgcggcc
ggtggcatcgacagctaccgcgaattgctgcagcgcttcgaggccgagaagaacatcccg
atggtggaggtggccgccgcgctggcacgcctgctgcagggcgacacgccgctgttgctg
gccccggaccgtccgcgcgcggcgccgcagggcgagcgtttcgaacgacctggcggcgag
cgtcgcgagcgcggtgagcgtccggaacgtgcaaagttcgagcagaaattcgaacgcgag
gcccggccatcccgtcgcgacgagggcgaacgtgcgccgcgtcctgccccggcccagggc
ggcgatttcgattaccaccgcgatgtcggcagtttcgaggcgccgcgccgcgacaaagcg
ccgaaagcgccgcgtggcgcaccggatgtgggtatggagacctaccgcatcgaagtcggt
caccagcatggggtgaagccagccaacatcgtcggtgccatcgccaacgaggccggactg
gaaagcaagtacatcggtcgcatcgatatccacgacgatcactcgatcctggacctgccg
gtggagatgccgcgcgagctgttggcgcacctgaagaaggtgtgggtctctggccagcaa
ctgcagatgcgcaagctcgacgacgctacgtccggcggtgcgccgttcaagccgaagttc
gcgcgtggcggcaagcccggtggcaagcccaacgccgccgccgcgcgtccaccggggcgc
ttcggcgaccgtcctggcgagcgtccgccgcgcaaggggccgcccaagcgttga
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