Xanthomonas sp. ISO98C4: AC801_12415
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Entry
AC801_12415 CDS
T06033
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xan
Xanthomonas sp. ISO98C4
Pathway
xan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AC801_12415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xan03400
]
AC801_12415
Enzymes [BR:
xan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AC801_12415
DNA repair and recombination proteins [BR:
xan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AC801_12415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AZU30630
UniProt:
A0A3T0FZD0
LinkDB
All DBs
Position
complement(2898817..2901435)
Genome browser
AA seq
872 aa
AA seq
DB search
MSLSEYRRKRSFDKTREPEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAAAPADDV
RRAGAGKTQRKALTTVPTPVAKKRGTWAKQALALSNARRAEMEDAPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTDGKVRLWSRNALEWTDKTPEIADAIQSLGLRSAQLDGELI
AGRGTKDDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKQLLEQVLEAAPN
THLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQDYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTRQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGAGPAASS
SAKRAPKKRAAKDAATQAPKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KRDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDRIRQNLARWAEQDEE
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgaataccgccgcaagcgcagcttcgacaaaacccgcgagccggagccg
ggcaaagccctgccgccgggccagcgtgcgatcttcgtggtgcagctgcaccacgccagc
cgtcgccattacgattttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagttacgaccccaaggtcaagcgcatggcggtggaggtggaagaccacccg
gtcgattacgccagtttcgaaggcgagattcccaagggcgaatacggtggcgggcacgtg
gcgcagttcgaccatggcgtgtgggcgaccgcgggcgaccccgaagcgcagttggccaag
ggacatctgcgcttcgagttgttcggcaacaagctcaagggcggttggcatctggtgcgc
tcgggcaagcccgcgcggcagccgcagtggctgctgttcaaagaggacgatgcctacgcc
ggtacattagaggccgacgacctactggccgacgtcgctgccgcgcctgccgacgatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcactgaccaccgtgccgacgccggtg
gcgaaaaagcgtggtacgtgggcgaagcaggcgctggcgctgagcaacgcacgtcgcgcc
gagatggaggatgcgccgttcgcgccgcagctggccaagctggggcagtccccgcccgaa
ggcgcgcagtggctgcacgaaatcaaatgggacggttaccgcatcctggctactgtgaca
gacggcaaggtaaggctgtggtcgcgcaatgcattggagtggaccgacaagacgccggaa
attgccgatgccatccagtcgctgggcctgcgcagcgcgcagctcgatggcgaattgatc
gccgggcgcggcaccaaggacgacttcaacctgctgcaggccaccttgtccggcgagcgc
caggtgccgctggcgttggcggtgttcgatctgctgcacgtggacggggtggacatcagc
gaggcgccgttgcgcgagcgcaaacagctgttggagcaggtgctggaggctgcacccaac
acgcatctggcctatagctcgcacgtcgaaggcgatggcaccgaggcgttccgggtggcc
ggcgaacagcacttcgaaggcatcatttccaagcgcgcggatcgcccgtatcgcgacggg
cgcagtgacgattggcgcaagaccaagcaactggccagccaggactatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggcttcggctcgctgttgttggccacgccggac
ccggtgcatggctggttgtacgtgggccgtgtgggttccgggttctccgatgccctgatg
cgtgaggtcacccggcaactggaaggtggcgggcgcaagcctaccgcgcacattcccacc
gaagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgtggcattggggggcaacagctgttgcgccaggcctcgttcaaggcgctgcgcccg
gacaaacgcattgccgatctggccgacagcgatgcaggagccggcccggctgcatcgtcg
tctgccaagcgtgcgccaaagaaacgtgctgccaaagacgccgcaacccaggcgcccaaa
cgtgcagcgacgcgagcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctacccacgctgtccagcccgaccaagttgatctacccggatatccgcgcgacc
aagcgcgatgtctgggactactaccaggcggtgatggatcacctgttaccgcagatcgta
ggacggccgctgtccatcatccgctgccctagcggtgccgaaaaaccgtgttttttccag
aagcaccataccgccggcctcgagcgcgtgagctcggtcaagctgaccgaagagaccggc
accaacgcgtattacctggtggtcgaagacgcgcccgggttgctggaactggtgcagttc
aatgcgctggaattccatccctggggctcgcatgcggatcgcccggatgtggccgaccgg
gtggtgttcgatctcgatcctggaccggacgtgccgtttgccgaggtcaaacgtgcggcc
aacgatatccgcaagctgctggcgcagctggagctggaatcgttcctgcgtgtctccggc
ggcaaggggctgcacgtggtggtgcccctgaaccccggctgcgactgggaggtgaccaag
cgtttcgccaagggatttgccgatgccctggcgcaggccgagccgcagcggttcatcgcc
acagccaccaagcggctgcgcaacaagcgcatcttcgtcgactacctgcgcaacggccgt
ggcgccactgcagttgcgtcctattccttgcgtggtcgtccgggggcgccagttgcgttg
ccgttggcgtggtcggacttgtccaagctgcagcgcgccgatgcgttcaccttgcgcgat
gtcccggagaagctgcgccgtcggcgcaaggacccttgggcagacatggaccgcatccgg
cagaacctggcgcgctgggcggagcaggacgaggagtga
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