KEGG   Xanthomonas sp. ISO98C4: AC801_12415
Entry
AC801_12415       CDS       T06033                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xan  Xanthomonas sp. ISO98C4
Pathway
xan03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AC801_12415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xan03400]
    AC801_12415
Enzymes [BR:xan01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AC801_12415
DNA repair and recombination proteins [BR:xan03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AC801_12415
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AZU30630
UniProt: A0A3T0FZD0
LinkDB
Position
complement(2898817..2901435)
AA seq 872 aa
MSLSEYRRKRSFDKTREPEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAAAPADDV
RRAGAGKTQRKALTTVPTPVAKKRGTWAKQALALSNARRAEMEDAPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTDGKVRLWSRNALEWTDKTPEIADAIQSLGLRSAQLDGELI
AGRGTKDDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKQLLEQVLEAAPN
THLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQDYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTRQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGAGPAASS
SAKRAPKKRAAKDAATQAPKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KRDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDRIRQNLARWAEQDEE
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgagcctgagcgaataccgccgcaagcgcagcttcgacaaaacccgcgagccggagccg
ggcaaagccctgccgccgggccagcgtgcgatcttcgtggtgcagctgcaccacgccagc
cgtcgccattacgattttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagttacgaccccaaggtcaagcgcatggcggtggaggtggaagaccacccg
gtcgattacgccagtttcgaaggcgagattcccaagggcgaatacggtggcgggcacgtg
gcgcagttcgaccatggcgtgtgggcgaccgcgggcgaccccgaagcgcagttggccaag
ggacatctgcgcttcgagttgttcggcaacaagctcaagggcggttggcatctggtgcgc
tcgggcaagcccgcgcggcagccgcagtggctgctgttcaaagaggacgatgcctacgcc
ggtacattagaggccgacgacctactggccgacgtcgctgccgcgcctgccgacgatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcactgaccaccgtgccgacgccggtg
gcgaaaaagcgtggtacgtgggcgaagcaggcgctggcgctgagcaacgcacgtcgcgcc
gagatggaggatgcgccgttcgcgccgcagctggccaagctggggcagtccccgcccgaa
ggcgcgcagtggctgcacgaaatcaaatgggacggttaccgcatcctggctactgtgaca
gacggcaaggtaaggctgtggtcgcgcaatgcattggagtggaccgacaagacgccggaa
attgccgatgccatccagtcgctgggcctgcgcagcgcgcagctcgatggcgaattgatc
gccgggcgcggcaccaaggacgacttcaacctgctgcaggccaccttgtccggcgagcgc
caggtgccgctggcgttggcggtgttcgatctgctgcacgtggacggggtggacatcagc
gaggcgccgttgcgcgagcgcaaacagctgttggagcaggtgctggaggctgcacccaac
acgcatctggcctatagctcgcacgtcgaaggcgatggcaccgaggcgttccgggtggcc
ggcgaacagcacttcgaaggcatcatttccaagcgcgcggatcgcccgtatcgcgacggg
cgcagtgacgattggcgcaagaccaagcaactggccagccaggactatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggcttcggctcgctgttgttggccacgccggac
ccggtgcatggctggttgtacgtgggccgtgtgggttccgggttctccgatgccctgatg
cgtgaggtcacccggcaactggaaggtggcgggcgcaagcctaccgcgcacattcccacc
gaagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgtggcattggggggcaacagctgttgcgccaggcctcgttcaaggcgctgcgcccg
gacaaacgcattgccgatctggccgacagcgatgcaggagccggcccggctgcatcgtcg
tctgccaagcgtgcgccaaagaaacgtgctgccaaagacgccgcaacccaggcgcccaaa
cgtgcagcgacgcgagcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctacccacgctgtccagcccgaccaagttgatctacccggatatccgcgcgacc
aagcgcgatgtctgggactactaccaggcggtgatggatcacctgttaccgcagatcgta
ggacggccgctgtccatcatccgctgccctagcggtgccgaaaaaccgtgttttttccag
aagcaccataccgccggcctcgagcgcgtgagctcggtcaagctgaccgaagagaccggc
accaacgcgtattacctggtggtcgaagacgcgcccgggttgctggaactggtgcagttc
aatgcgctggaattccatccctggggctcgcatgcggatcgcccggatgtggccgaccgg
gtggtgttcgatctcgatcctggaccggacgtgccgtttgccgaggtcaaacgtgcggcc
aacgatatccgcaagctgctggcgcagctggagctggaatcgttcctgcgtgtctccggc
ggcaaggggctgcacgtggtggtgcccctgaaccccggctgcgactgggaggtgaccaag
cgtttcgccaagggatttgccgatgccctggcgcaggccgagccgcagcggttcatcgcc
acagccaccaagcggctgcgcaacaagcgcatcttcgtcgactacctgcgcaacggccgt
ggcgccactgcagttgcgtcctattccttgcgtggtcgtccgggggcgccagttgcgttg
ccgttggcgtggtcggacttgtccaagctgcagcgcgccgatgcgttcaccttgcgcgat
gtcccggagaagctgcgccgtcggcgcaaggacccttgggcagacatggaccgcatccgg
cagaacctggcgcgctgggcggagcaggacgaggagtga

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