Xanthomonas arboricola: XB05_08885
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Entry
XB05_08885 CDS
T06096
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xar
Xanthomonas arboricola
Pathway
xar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XB05_08885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xar03019
]
XB05_08885
03009 Ribosome biogenesis [BR:
xar03009
]
XB05_08885
Enzymes [BR:
xar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XB05_08885
Messenger RNA biogenesis [BR:
xar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XB05_08885
Ribosome biogenesis [BR:
xar03009
]
Prokaryotic type
rRNA helicases
XB05_08885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
adh_short
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKC78830
UniProt:
A0A0E3UE58
LinkDB
All DBs
Position
complement(2094072..2096006)
Genome browser
AA seq
644 aa
AA seq
DB search
MTQESPAPLLFADLGLSDAVMKAVAAVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAALAKLLQGDAPFLLTPPVRGAREEFAPRERNDRGDRNDRGERPRFEPKFERGPR
ADGERAARPPRAERPAFASDGAGAERPRRDPVAPRGEPEFGMESYRIEVGHTHGVKPANI
VGAIANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGE
AAASPSKPRFPRGGKPSGRPNGPNRPMDRAGAPHRKGPPKPRGE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatctcccgcgccgctgctgtttgcagacctcggcctctcagacgctgtg
atgaaggcggttgccgccgtcggctatgagtcgccgtcgccgatccaggccgccaccatc
cccgcgctgctggccggccgcgacgtgctcggccaggcgcagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaatgccgacctcaaccagctcaagccgcaggcg
ctggtgctggcgccgacccgcgagctggccatccaggtcgccgaggcgttccagaaatat
gccgaagccattcccggcttccgcgtgctgcccgtgtacggcggccagccctacgcgcag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtcggcacccccggccgcgtgatc
gatcacctggaccgcggcacgctggacctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagttg
ccggagaagcgccaggtggcgctgttctcggcgaccatgccgccggcgatccgccgcatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcggcctgcacaagctggacgcgctgacc
cgcatcctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggctgcc
accgaagagctggcgcagaagctgcaggcacgcggcatggccgcggcggccatcaacggc
gacatgcagcaggccgcccgcgagaagaccattgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcgcgtcagccatgtg
ctgaactacgacatcccgtacgacaccgagagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcaacggtgatgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccgccagccgatcgaagaaatgcagctgccgagcgtggat
gcggtcaacgacacccgcgtggcacgtttcatgacccgcatcaccgagaccctggccggc
ggccagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtaccg
gcgatcgatatcgctgcagcattggccaagttgctgcagggcgatgcgccgttcctgctg
accccgccggtgcgcggtgcacgcgaggaatttgcaccgcgcgagcgcaacgatcgcggc
gaccgcaacgatcgcggcgagcgtccgcgcttcgagccgaagttcgagcgtggcccgcgt
gccgatggcgagcgcgcggcacgcccgccgcgtgcggaacgtccggcgttcgccagcgat
ggcgcgggcgccgagcgtccgcgtcgcgatccggttgccccgcgtggcgagccggagttc
ggcatggagagctaccgcatcgaagtgggccacacccacggcgtgaagccggccaacatc
gtcggcgcgatcgccaacgaagccggcctggaaagccgctacatcggccgtatcgacatc
caggacgactattccatcctggacctgccggccgacatgccgcgcgagctgctgacgcac
ctgaagaaggtctgggtgtccggccagcagctcaacatgcgcaagctggaagaaggcgaa
gcggccgcgtcgccgtccaagccgcgcttcccgcgcggcggcaagccgtccggtcgcccg
aatggcccgaaccgtccgatggaccgcgccggcgcgccgcatcgcaagggcccgcccaag
ccccgcggcgagtaa
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