Xanthomonas sp. SS: HEP74_00036 Help Entry HEP74_00036       CDS       T09534                                  Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism xas  Xanthomonas sp. SS Pathway xas03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:xas00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     HEP74_00036  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:xas03400]     HEP74_00036 Enzymes [BR:xas01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      HEP74_00036 DNA repair and recombination proteins [BR:xas03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      HEP74_00036 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M SPOR DNA_primase_S mRNA_cap_enzyme Motif Other DBs NCBI-ProteinID:  QNH14923 UniProt:  A0A7G7SDV3 LinkDB All DBs Position 36011..38755 Genome browser AA seq 914 aa AA seqDB search MTLREYARKRRFGATPEPADDSVAAPSRRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP KGPSLRVGEKRLAVQVEDHPLSYAGFAGDIPEGHYGAGHVDVFDHGTWSCDGEPLAAIAA GKLDFVLHGERLNGNWKLVRTALRGKQPQWLLIKRDDAFAADRDADDLLQEPVSAPAPKR AAKAAKPTKAGKASKRARDAATAKPAAAGAAAPSAARPRRSDAAWRKRALALDGARDRPC PPGERAQLTLLRDRAPDGAQWLHEIKWDGYRLLADLDAGQATLRSRNDQAWTETFPEVAH AVQALPVSEARLDGELVVLDADGRSDFSALQRVIEGSSKQPLRYLVFDLLGVAGVDLREV PLLQRKQLLRALLGDTPGVLAYSDHVLGHGPEVFAAAAAKGYEGVVSKRADARYHGGRGG DWVKTKHENSDDFVIVGYTDPKGARSGFGSLLLAQRSDGGLRYVGRVGTGFDESGLRRLL AQLQALHSEQAVVDIPAHAPFPRRSVHWVRPQLVAEVAFRGWAKEGLLRQAAFKRLREDK PLQDLGGDRAPPPAAAPGSHVVAARAAASAKKTAPAARGPATPAKRSTSKGDATKNGAAK RKPATAKSAPRASTAARKVASSASADADAAAVVITHPERVVYPGAGISKGEVAEYYRAIA PWLLQEVAGRPLSLLRCPDGAGGECFFQKHNNRALGEHVHAIALKQKSGTEDYLYIDDLA GLLELVQMNTLELHPWGSTVDDPEHPDRLVFDLDPGEGVSWTQIKAAAREIRTRLRETGL ESFVRLSGGKGLHVVVPIVPGADWEQARDFCEAFAQALAGSAPERYVATMSKAKRNGVIF VDWLRNGRGNTSVCSWSLRAREHATVAVPLRWEELARIASPQAFPLAKALQRAARLREHP WKEMETLQQRLPGS NT seq 2745 nt NT seq  +upstreamnt  +downstreamnt atgacgctgcgcgagtacgcccgcaaacgccgcttcggcgcgaccccggaaccggccgac gacagcgtcgcggcgccgtcgcggcggccgatcttcgtggtgcagctgcaccacgccagc tcgcgccactacgatttccgcctggaagccgacggcgtgctgaagagttgggcggtgccg aaggggccgtcgctgcgggtcggcgaaaagcggctggcggtgcaggtggaagaccatccg ctgtcctatgccggcttcgccggcgatattcccgagggccattacggtgccggccatgtc gatgtgttcgaccacggcacctggtcgtgcgacggcgaaccgctggccgcgatcgccgcc ggcaagctggatttcgtgctgcacggcgagcgcctcaacggcaactggaaactggtacgc actgcgttgcgcggcaagcagccgcagtggctgctgatcaagcgcgacgacgcgttcgcc gccgatcgcgatgccgacgacctgctgcaggagccggtctccgcgcctgcgccgaagcgc gcggccaaggccgccaagcccaccaaggccggcaaggcctccaagcgtgcgcgcgatgca gccacggccaagcctgccgccgctggcgctgcggctccgtcggccgcgcggccgcggcgc agcgatgcggcctggcgcaagcgcgcgctggcgctggacggtgcgcgcgatcggccgtgt ccgccaggcgagcgcgcgcagctgacgctgctgcgcgaccgcgcgcccgacggcgcgcaa tggctgcacgagatcaagtgggacggctaccgcctgctcgccgatctcgatgccggccag gcgacgctgcgctcgcgcaacgaccaggcctggaccgagaccttccccgaggtcgcgcac gcggtgcaggccttgccggtgagcgaggcgcggctggatggcgaactggtggtgctcgat gccgacggccgcagcgatttctccgccttgcaacgggtcatcgagggaagttccaagcag ccgctgcgctacctggtgttcgacctgctcggcgtggccggcgtggacctgcgcgaggtg ccgctgctgcagcgcaagcaactgctgcgcgcgctgctcggcgacacgccgggcgtgctg gcctacagcgaccatgtgctcggccatggcccggaggtgttcgccgcggcggcggcgaag ggctacgaaggcgtggtcagcaagcgcgcggacgcacgctatcacggcggccgcggcggc gactgggtcaagaccaagcacgagaacagcgacgatttcgtcattgtcggctataccgat cccaagggcgcgcgcagcggcttcggttccttgctgctggcgcagcgcagcgatggcggc ttgcgctatgtcggccgggtcggcaccggtttcgacgaatcggggctgcggcgcttgctt gcgcagctgcaggcgctgcacagcgagcaggcggtggtggacattcccgcgcatgcgcca ttcccgcggcgcagcgtgcactgggtgcggccgcaactggtagccgaagtcgccttccgt ggctgggccaaggaagggttgttgcgccaggccgcattcaagcgcctgcgcgaggacaag ccgctgcaggatctcggtggcgatcgtgcgccgccaccggcggcagccccaggcagccat gtcgtggcggctcgcgctgcggcatcggcgaagaagaccgcgccggccgcgcgcgggcca gccacgccggcgaaacgcagcacatccaaaggcgatgctacgaaaaacggtgccgccaag cgcaaaccggcaactgccaagtccgcgccgcgcgcaagcaccgcggcgcggaaggtcgct tcctccgccagcgccgacgccgatgccgcggcggtcgtcatcacccaccccgaacgcgtg gtgtacccgggcgccggcatcagcaagggcgaggtcgccgagtactaccgtgccatcgca ccatggttgctgcaggaagtcgccgggcgtccgctgtcgttgctgcgctgccccgatggg gccggcggcgaatgcttcttccagaagcacaacaaccgcgcgctcggcgagcatgtacac gcgatcgcactgaagcagaagagcggcaccgaggactacctgtacatcgacgatctcgcc ggcctgctggaactggtgcagatgaacaccctggagctgcatccctgggggtcgaccgtg gacgatcccgagcatcccgaccggctggtgttcgacctggacccgggcgagggcgtgagc tggacgcagatcaaggccgcggcgcgcgagatccgcacccgcctgcgcgagaccgggctg gaaagcttcgtgcgcttgtccggtggcaagggcctgcacgtggtggtgccgatcgtgcct ggcgcggattgggagcaggcccgcgatttctgcgaagccttcgcccaggcgctggccggc tctgcgcccgagcgctacgtggccacgatgagcaaggccaagcgcaatggagtgatcttc gtcgattggctgcgcaacggccgcggcaacaccagcgtgtgctcgtggtcgctgcgcgcg cgcgagcacgccaccgtggcggtgccgctgcgctgggaggaactggcgcggatcgcctcg ccgcaggcgttcccgctggccaaggcgctgcagcgcgccgctcgcctgcgcgagcatccg tggaaggagatggagacgctgcagcagcggctgcccggaagctga

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