Xanthomonas sp. SS: HEP74_01545
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Entry
HEP74_01545 CDS
T09534
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xas
Xanthomonas sp. SS
Pathway
xas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP74_01545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xas03019
]
HEP74_01545
03016 Transfer RNA biogenesis [BR:
xas03016
]
HEP74_01545
Enzymes [BR:
xas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HEP74_01545
Messenger RNA biogenesis [BR:
xas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP74_01545
Transfer RNA biogenesis [BR:
xas03016
]
Prokaryotic type
tRNA degradation factors
HEP74_01545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
HTH_20
HTH_IclR
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QNH16417
UniProt:
A0A7G7SI47
LinkDB
All DBs
Position
1939647..1942115
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AA seq
822 aa
AA seq
DB search
MTNRKTKSGKPGKSASNDTPASKAGAPAAPPPPKKSKMPSWMPSLPSFLRRSPKPPLQPL
HPPEPVSAPSSRKKPAAAVADPFAAREAERYAEPIASREAILQLLDRCDGPQTLEELAGQ
LGLTEPSRMEALSKRLGAMLREAQLVQNRRGGYAPVQQTNLIPGVVIANPDGFGFLRPDE
GGDDLFLPPYEMRKVLHGDRALANVTGIDRRGRREGSIARVIERGLSRLIGRFSMEGGIA
YVVPDDKRIQRNIQIPTDAMGEARDGQLVVCELTSTPDGRRPPIGKIIAVLGDKLTPSLV
VETAIHGRELPYEFPQAVLDEAAAVPMTVEPAAIKGRVDLRQTPLVTIDGADAKDFDDAV
FCEPNAEGFRLVVAIADVSHYVRPGTPLDVEAIRRATSVYFPGFVVPMLPETLSNGICSL
NPKVDRMCFVCDMQIDRQGEVAGARFYEAVMNSHARLTYDQVWQAVGEKDEQVRKDVAAV
LPQIERLYQLFHVLAKARSRRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECM
IAANVAAARHLLDARIPAPYRVHERPPESKYADLLEFLKEFKLSLPPWSKVVPGDYTKLL
KKVRERPDAALLESVLLRSQSMAVYSPDNAGHFGLALEAYAHFTSPIRRYPDLLVHRAIK
YALTHGAPDKYLYSPREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVV
SGVTSFGLFVELDHSKVNGLIHVTQLPQDYYQFDAVRKTLSGERRGMQFRLGDRVRILVL
KASMEERKIDFRLVVEGEPLTDMPPPPERGQQQPAKRKKKKY
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatagaaaaaccaagtccggcaagcccggcaaatccgcatccaacgacacgccc
gccagcaaggccggcgccccggcggctccgcctccgccgaagaaatccaagatgccgtcg
tggatgcccagcctccccagtttcctgcggcgcagccccaagccgccgttgcagccgctg
catccgcctgagccggtgtccgcaccgtcctcgcgcaagaagccggccgctgcggtggcc
gatccgttcgccgcccgcgaggccgagcgctatgccgagccgatcgctagccgcgaggcg
atcctgcagttgctggaccgctgcgacggcccgcagacgctggaagaactcgccggccag
ctcggcctgaccgaaccttcgcgcatggaggcattgagcaagcgcctgggcgcgatgctg
cgcgaggcgcaactggtgcagaaccgccgcggcggctacgcgccggtgcagcagaccaac
ctgatccccggtgtggtgatcgccaatcccgacggcttcggcttcctgcgtccggacgag
ggcggcgacgacctgttcctgccgccctatgaaatgcgcaaggtgctgcatggcgaccgc
gcgctggccaacgtcaccggcatcgaccgccgcggccgccgcgaaggcagcatcgcgcgc
gtgatcgagcgcggcctgagccggctgatcggccgcttcagcatggaaggcggcatcgcc
tacgtggtgccggacgacaagcgcatccaacgcaacatccagatcccgaccgatgcgatg
ggcgaggcccgcgacggccagttggtggtgtgcgaactcacctccaccccggacgggcgg
cgcccgccgatcggcaagatcatcgcggtgctcggcgacaagctgacgccgtcgctggtg
gtggaaaccgccatccacggccgcgagctgccgtacgaattcccgcaggcggtgctcgac
gaagccgcggcggtgccgatgacggtggagccggccgcgatcaagggccgcgttgacctg
cggcagaccccgctggtgaccatcgacggcgccgacgccaaggacttcgacgacgcggtg
ttctgcgagccgaacgccgaaggcttccgcctggtggtggcgatcgccgacgtgtcgcac
tacgtgcgtccgggcacgccgctggacgtggaagcgatccgccgcgcgacctcggtgtat
ttccccggcttcgtggtgccgatgctgccggagacgctgtccaacggcatctgttcgctc
aatcccaaggtcgaccgcatgtgcttcgtctgcgacatgcagatcgatcgccagggcgag
gtggccggcgcgcgcttctacgaggcggtgatgaattcgcacgcgcggctcacctacgac
caggtgtggcaggcggtgggcgagaaagacgagcaggtgcgcaaggacgtggccgcggtg
ctgccgcagatcgagcgcctgtaccagctgttccacgtgctggccaaggcgcgttcgcgc
cgcggcgcgatcgagttcgagacctcggaagtgcgcttcgtgctcgacaacaccggcgaa
gtgacccaggccgggatgctggtgcgcaacgacgcgcacaagctgatcgaggaatgcatg
attgccgccaacgtggccgcggcgcggcacctgctggacgcgcgcatcccggcgccgtac
cgcgtgcacgagcggccgccggagtccaagtacgctgacctgctggagttcctcaaggaa
ttcaagctgagcctgccgccgtggagcaaggtggtgccgggcgactacaccaagctgctg
aagaaggtgcgcgagcgccccgacgcggccttgctggagtcggtgctgctgcgcagccag
agcatggcggtgtactcgccagacaacgccggccacttcggcctggcgctggaggcgtac
gcgcacttcacctcgccgatccgccgctatcccgacctgttggtgcaccgcgcgatcaag
tacgcgctgacccacggcgcgccggacaagtacctgtattcgccgcgcgagatggcggcg
ctggcgctgcagtgctccgagcgtgagcgccgtgccgacgaggccgagcgcgaggtcgac
gagcgctaccgcgcggcgtggatggaaaagcacgtcggcggccagttcgacggcgtggtc
agcggcgtcaccagcttcggtctgttcgtggagctggaccattccaaggtcaacggcctg
atccacgtgacccagctgccgcaggactattaccagttcgacgcggtgcgcaagaccctg
tccggcgagcgccgcggcatgcagttccggctcggcgaccgggtccgcatcctggtgctg
aaggcgagcatggaagagcgcaagatcgacttccgcctggtggtggaaggcgagccgctg
accgacatgccgccgccgccggaacgtgggcagcagcagccggccaagcgcaagaaaaag
aagtactga
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