Xanthobacter autotrophicus: Xaut_4365
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Entry
Xaut_4365 CDS
T00581
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xau
Xanthobacter autotrophicus
Pathway
xau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Xaut_4365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xau03400
]
Xaut_4365
Enzymes [BR:
xau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Xaut_4365
DNA repair and recombination proteins [BR:
xau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Xaut_4365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ABS69586
UniProt:
A7INJ2
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All DBs
Position
complement(4836935..4839595)
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AA seq
886 aa
AA seq
DB search
MATDKLSTYKAKRDFQLTQEPSGGATASASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPE
QALAQGDLKFTLDGERLHGSFVLVRMANDRDRGKRTNWLLMKHRDAFAVAANGAAILDDY
DTSVASGRTMAAIATGKGRKPSVFMVQGGKVESDAVWDSRTGLAAEARKAPARRSKTPDK
IATADLPDFIAPQLCQTVERPPSAAGWLHEIKFDGYRVQMRVRDGKVTLKTRKGLDWTAR
FAAIARAAGKLPDAIIDGEICALDNNGAPDFAAIQAALSEGKTDGLVYFAFDLLFEGGED
LRSLPLAERKGRLQQFLIGAGEDARLRFVEHFDTGGEAVLRSACRLSLEGIVSKRADAPY
VSGRTDTWAKSKCRAGHEVVIGGYATTAGKFRSLLVGVHRGDSFVYVGRVGTGYSAAKVR
GLLPKLQAVKRAKSPFTGICAPKQEPGVVWLKPELVAEIEFAGWTSDGLVRQASFKALRE
DKPADEVQADTPAAPETAEVPQPAPRKSSESTEPSKSARRGGKVDVMGVLISSPDKVLWP
DANDGRPVTKEDLARYYEAVGPWLIDHIRGRPCSIIRAPDGIGGTQFFQRHAMPGTSSLL
ELVTVFGDKKPYLQIDRVEGLAAVAQVGALELHPWNCVPQHPEVPGRLVFDLDPGPDVPF
STVVEAAREMRQRLDALGLVSFCKTTGGKGLHVVTPLAVSRRNPLSWPQAKGFARDVCLQ
MVRDNPELYLIKMTKALRTGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWDEVTA
DLDPRRFTLRTVPGLLAKSAPWDDYSDGERPLEPAIRRLGKAMKAA
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacaagctctctacctacaaggcgaagcgcgatttccaactgacacaggag
ccgagtggcggcgcgacagcgagcgcctcgaaccgccgccgcttcgtcatccagaagcat
gacgccacgcggttgcactacgatctccgactggaactcgacggcgtcttcaagtcctgg
gcggtgacccgcggtccttccctcgacccccacgacaagcgcctcgccgtggaagtggaa
gatcatccgctcgactatggcgactttgaagggacgatccccaagggccaatacggcggc
ggcacggtcatgctctgggaccggggctactgggagccggaaggcaagatgagccccgag
caggcgttggcgcagggcgatctcaagttcaccctcgacggggagcggctgcatggcagc
ttcgtgctggttcgcatggccaatgaccgcgaccggggcaagcgcacaaactggctcctg
atgaagcatcgcgacgcattcgcggtcgcggcgaacggcgctgcgatcctcgacgactac
gacacgtccgtcgcgtcgggccgcaccatggcggccatcgccacgggaaaggggcgcaag
cccagcgtcttcatggtgcagggaggcaaggttgagtccgatgcggtctgggacagtcgc
acaggcctcgcggccgaggcgcgcaaggcgccggcacggcgaagcaagacgccggacaag
atcgcgaccgccgatctccccgatttcatcgccccgcagctgtgccagaccgtggagcgc
ccgccttctgcggccggttggcttcacgaaatcaagtttgacggctaccgcgtccagatg
cgggtgcgtgacggcaaggtgaccttgaagacccgcaagggtctcgattggaccgcaaga
tttgcggccatcgcgcgagccgccggcaagctgccggacgcgatcattgatggcgagatc
tgcgccctggacaacaacggcgccccggatttcgcggcgattcaggcagccctttccgag
ggcaagaccgatggactcgtctatttcgccttcgacctcctgttcgaagggggcgaggat
ctgcggtccttgccactggccgagcgcaagggtcgattgcagcagttcctgatcggtgcc
ggcgaggatgcccggctgcggttcgtcgagcatttcgacaccggcggcgaggcggtgctg
cgctcggcctgccgcctctcgcttgagggcatcgtgtcgaagcgggcggatgcgccctac
gtctccgggcgaacggacacctgggcaaagtccaagtgccgcgcgggacatgaggtggtc
atcggtggctacgcgaccaccgccggaaaattccgttcgctcctcgttggcgtccaccgt
ggcgacagcttcgtctatgtggggcgcgtcgggacggggtacagcgcggcgaaggtcagg
ggcctcctgccgaaacttcaggcggtcaagagggcgaaatcgcccttcaccggcatctgc
gcgccgaagcaggagcccggcgtggtctggctcaagcccgaacttgtcgccgagatcgag
ttcgccggttggacatccgacggcctcgtccgccaggcctctttcaaggccttgcgtgag
gacaagccggcggacgaggtgcaggccgacacgccggctgcgcccgagaccgctgaggtg
ccgcagccggcgccgcgcaagtcgtccgagagcaccgagccgtcgaagtcagcccgccgc
ggcggcaaggtcgacgttatgggtgtcttgatctcgagccccgacaaggtgctctggccg
gacgccaacgacggccggccagtcaccaaggaggatctggcccgctattacgaagctgtc
ggcccttggctgatcgaccatatccggggccggccgtgctccatcatccgggcgccggat
gggatcggcggcacgcaattcttccagcgccacgccatgccgggaacgtccagcctgctg
gaactcgtgaccgtcttcggcgacaagaagccgtatcttcagatcgatcgcgtggaaggg
ctggccgccgtcgcccaggtgggcgctttggagttgcatccctggaattgcgtgccccag
catccggaagtgcccggtcgcctcgtcttcgatctcgaccctggcccggacgtgccgttc
tcgacggtcgtcgaagccgcgcgggagatgcgccagcggctcgatgcactcggcctggtg
agcttctgcaagacgaccggcggaaaaggcctgcatgtcgtcacgccgctggcggtgtcc
aggcgcaatccgctctcctggccgcaggccaagggcttcgcgcgggatgtctgcctgcag
atggtgcgcgacaatccggagctctatctgatcaagatgaccaaggccctgaggacaggc
cgtatcttcctcgactatctgcgcaacgatcgcatggcgaccgccgtggcgccgctttct
ccccgcgctcggcccggcgccaccgtctccatgcccctcacctgggacgaggtcacagcc
gatctcgacccgaggcgcttcacgctccgcaccgttcccgggctgttggcgaaaagcgcg
ccctgggatgactacagcgacggcgagcgcccgctggagccggccatccggcggctgggc
aaggccatgaaggcggcgtga
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