Pseudolysobacter antarcticus: ELE36_06845
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Entry
ELE36_06845 CDS
T06010
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xbc
Pseudolysobacter antarcticus
Pathway
xbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ELE36_06845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbc03400
]
ELE36_06845
Enzymes [BR:
xbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ELE36_06845
DNA repair and recombination proteins [BR:
xbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ELE36_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AroM
ERCC3_RAD25_C
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBB70105
UniProt:
A0A411HHW8
LinkDB
All DBs
Position
complement(1605748..1609194)
Genome browser
AA seq
1148 aa
AA seq
DB search
MKALLTPPLPSSSKHRSFWLPPQGSALALAIAETARKHDGLVVAVTRDTHAAHTLDDDLR
VFAGELPVLHFPDWETLPYDLFPPHPEIVSQRIATLYQLPTTTRGVLVVPIGTLMQRLAP
RSFITGFGLVLAVKQKLDLGIEQRRLESAGYRHVPQVSEPGDFAVRGALLDIFPMGSAEP
YRVELFDDEIDSIRTFDPESQRSQEKVESVRLLPAREFPLTEESAKHFRNTLRERFPIDP
RRCPVYQDLKEGATPAGIEYYLPLFFEKTETLFDYLGEKSLFVLNEGALDAATQFYAQAQ
ARYDQRAHDIERPILPVPELYLPPENLRERLNQTLRVEIVEKGRNEHAVALATQPAPQLA
LARKGEIPGAELKAFLSAYPGRVLIATDSAGRREALLDTLAELSIKPAVVASWQEFLRSD
ARFAITVATLDDGLAINDPPLTVLTERQLYGERVQQQRRRKRVGRDPDAIIRDLADLAIG
APVVHADHGVGRYQGLLKLDVGGEGGEFLAIEYAKGDKLYVPVAQLHLVSRYSGAASELA
PLHSLGGEQWAKAKRKAAEKVRDAAAELLALYAKREARPGYAFEFDRAMYAQFAATFPFE
ETPDQASAIEAVINDLIAPKSMDRVVCGDVGFGKTEVALRAAFVAAIAGKQVAVLVPTTL
LAQQHYQNFRDRFADWPIRVEVLSRFKSKKEIEAEIRKLADGSLDVIIGTHRLLQADVKF
KDLGLVIVDEEQRFGVRQKEALKKLRAEVDLLTLTATPIPRTLNMAMSGLRDLSIIATPP
AHRMAVQTVISPTDPALMREAFQRELSRGGQVYYLHNEVESIEKAARELGELVPEARIRV
AHGQMPERELEQVMLDFYRQRFNVLVCTTIIESGIDVPSANTIVINRADKFGLSQLHQLR
GRVGRSHHRAFAYLMVPDRRSISGDAEKRLEAIASLEELGAGFTLATHDLEIRGAGELLG
EEQSGEITEIGFSLYTELLDRAVRALKSGKVPDFDLTSEHDALVELHLAALIPDDYLPDV
HTRLTLYKRIASAQDEDQLRELQVEMIDRFGLLPEQVKNLFGVAALKLAATRLGIRKLDV
GATGGRVIFKPQPNVDPMTVIKLIQKMPKVYGLDGQDKLRIRLELPGTAERLRSARELLI
ALGANMAE
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccttattgactccgccgctgccgagcagcagcaaacatcgcagtttctggttg
ccaccgcagggctcggcactcgctttggcgatcgccgaaaccgcgcgcaagcatgatggt
ctggtggttgcggtaacgcgcgatacccacgccgcgcacacgctcgacgacgacttgcgc
gtattcgccggcgagttgccggtgttgcattttccggattgggaaaccctgccctacgat
ctgtttccgccgcatccggaaatcgtttcgcagcgcatcgccacgttgtatcaattgccg
acgacgacacgcggcgtgttggtcgtgccgatcggcaccttgatgcaacgcctcgcgccg
cgcagcttcatcaccggcttcggcctggtgctggcggtgaaacagaaactcgatctcggc
atcgaacaacgtcgcctcgaaagcgcaggttataggcatgtgccgcaggtttccgagccc
ggcgattttgccgtgcgcggtgcactgctcgatattttcccgatgggcagcgccgagccg
tatcgtgtcgaattgttcgatgacgaaatcgattcgatccgcaccttcgatcccgaatcg
caacgctcgcaggaaaaagtcgagtcggtgcgcctgctgcccgcgcgcgaatttccgctc
accgaagaatcggcgaaacatttccgcaataccttgcgcgaacgttttccgatcgacccg
cgccgctgcccggtgtatcaggatctgaaggaaggcgcgacacccgccggcatcgaatat
tacctgccgctgtttttcgagaagaccgaaaccctgttcgattatctcggcgagaaatcg
ctgttcgtcttgaacgaaggcgcgctcgatgcggcaacgcagttctacgcgcaggcgcag
gcgcgttacgaccagcgcgcgcacgacatcgaacgcccgatcctgccggtgccggaactg
tatctgccgccagagaatctgcgcgagcgcctgaaccagaccttgcgtgtcgagatcgtc
gagaaggggcgcaacgagcacgccgtcgcgctcgccacacaacccgcaccgcagctcgcg
ctcgcgcgcaagggcgaaattccgggcgcagaactgaaagcgtttctaagcgcgtatcca
ggccgcgtattgatcgctaccgattcggcaggtcgtcgcgaagccctgctcgatacgctg
gccgaactttcgatcaaacccgcggtagtcgcgagctggcaggaattcctgcgcagcgac
gcgcgattcgcgatcacggtcgccacgctcgacgatggcctcgcgatcaacgatccgccg
ctgaccgtgctgaccgaacggcagttatacggcgagcgcgtgcagcagcagcgccgacgt
aaacgtgtcgggcgcgatcccgacgcgatcatccgcgatctggccgatctcgcgatcggt
gcgccggtggtgcacgccgaccatggtgtcggtcggtatcaaggtttgctcaagctcgat
gtcggcggcgaaggcggcgaatttctcgcgatcgaatacgccaagggcgacaagctgtac
gtgccggtggcgcagctgcatctggtcagtcgttattccggtgccgcgtcggaactcgcg
ccactgcattcgctcggcggcgaacaatgggccaaagccaagcgcaaggcagcggaaaaa
gtacgcgatgccgctgccgaattgctcgcgctgtacgccaagcgcgaggctcgtccgggt
tatgcgttcgagttcgatcgcgccatgtacgcgcaatttgcggcgaccttcccgttcgag
gaaacaccggatcaggccagcgcgatcgaagcggtgatcaacgatctcatcgcgccgaaa
tcgatggatcgcgtggtgtgcggcgatgtcggttttggcaagactgaagtcgcattacgc
gccgcatttgtcgcggcgattgctggcaaacaagttgccgtgctggtgccgaccacgttg
ctcgcgcagcagcattaccagaatttccgcgaccgctttgccgactggccgatccgcgtc
gaagtgctgtcgcgcttcaagtcgaaaaaggaaatcgaggcggaaatccgcaagctagcc
gatggcagtctcgatgtaattatcggcacgcaccgattgttgcaggccgatgtgaagttc
aaggatctcggcctcgtcatagttgatgaagaacaacgtttcggcgtgcgccagaaagaa
gcgctgaaaaaactgcgcgccgaagtcgacctgctcacactcaccgccacgccgattccg
cgcacgctcaacatggcgatgagcgggctgcgcgatctgtcgatcatcgccacaccgccg
gcgcatcgcatggccgtgcagactgtgatttcgccgactgatccagccttgatgcgcgag
gcattccaacgcgagctgtcgcgtggcggccaggtttattatctgcacaacgaagtcgag
agcatcgaaaaagctgcgcgcgaacttggcgaactcgtgcccgaagcgcgcatccgtgtt
gcgcatggacagatgccagaacgcgaactcgaacaggtcatgctcgatttttatcgtcag
cgtttcaacgtgctggtgtgcacgacgatcatcgaatccggcatcgacgtgccgagcgcc
aataccatcgtgatcaatcgcgccgacaaattcgggctgtcgcaattgcatcagttgcgc
ggtcgcgtcgggcgctcgcatcatcgtgcgtttgcgtatctgatggtgcctgatcgacgc
agcatcagcggcgatgcggagaagcgtctcgaagcgatcgcctcgctcgaagaactcggc
gcgggtttcaccttggcgacgcacgatctcgaaatccgcggcgctggcgaattgctcggc
gaggaacaaagtggcgagatcaccgagatcggattctcgctgtacaccgaattgctcgat
cgcgcggtgcgcgcattgaagtccggcaaggtgccggatttcgatctgacctcggaacac
gacgccttggtcgaactgcatctggccgcgctgatcccggacgactatctgcccgatgtg
cacacacgcctgaccttgtacaaacgcatcgcgagtgcgcaggacgaggatcaactgcgc
gagttgcaagtcgagatgatcgatcgttttgggctactgccggagcaggtgaaaaacctg
ttcggcgtggccgcgctgaaacttgcggcgacgcgtcttggcatccgcaaactcgatgtc
ggcgcgaccggtggccgcgtgattttcaaaccgcaaccgaatgtcgatccgatgaccgtg
atcaaactgatccagaaaatgccgaaggtttatgggctggatgggcaggacaaattgcgc
atcagacttgagctaccgggtacggctgaacggttgcgcagcgcgcgtgagttgttgatt
gcgttgggcgcgaatatggcggagtga
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integrated database retrieval system
