Pseudolysobacter antarcticus: ELE36_09695
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Entry
ELE36_09695 CDS
T06010
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xbc
Pseudolysobacter antarcticus
Pathway
xbc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ELE36_09695 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbc03400
]
ELE36_09695 (ligD)
Enzymes [BR:
xbc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ELE36_09695 (ligD)
DNA repair and recombination proteins [BR:
xbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ELE36_09695 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
TraF
Motif
Other DBs
NCBI-ProteinID:
QBB70616
UniProt:
A0A411HJA5
LinkDB
All DBs
Position
2294757..2297195
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AA seq
812 aa
AA seq
DB search
MPLQTYRRKRRFADTPEPAAGGKRGKAPIFVVQLHHASHRHYDFRLEVDGALKSWAVPKG
PSLDPSVKRLAVEVEDHPLSYAKFSGDIPKGNYGAGHVDIFDYGTWQAEGSARADLKRGE
LKFVLHGKILRGSWVLVRTKREAAKPQWLLIKHHDEFSSKSEADDFVADEPKKPVAEIGK
TSRRKKSASLKNGAFAPELCRTTTAPPAGDAWLHEAKWDGYRLLTTVVAGVVRLWSRNAI
EWTVRLPEIVAAIRKLKLDNAKLDGELVVLDGNRADFNKLQARLAGENDATLIYMLFDAP
YLDGESLRDVPLIERKQRLSKLLRKSKQQVLRFSEHHVGAGETVMQQAVAAGIEGIVSKR
LDSPYRGGRNGDWIKIKARMSDEFAVIGFSQPQGIRSGIGALLLGKPAEDGFRYVGRVGT
GFSAEKLRELRTMLDKNIVDKAPSDTSLLERKYRNNAVWVSPKLVVEVYFQGRGGNGLLR
QPAFKTLREDKTVHDLSEKTSSKKTSAKAQPDKAQKAEPKRATPSTGEIEITHPERKAIP
ALNVTKQDVADYYSLVSAWLLPEIANRPLSVLRCPDGIHSACFFQKHAGKGWGEHIKSIT
IKEKNGSAEYLCIDDVLGLLELVQMNVLELHPWNTHARDLKRADRLVFDLDPHASVTWKR
MVAAARILRKHLASIGLESFVRTSGGKGLHVVVPLRPTVAWAKVKAFAQAIAVAMSTLQP
DEFVAVAGDKNRQGKIFIDWLRNTAGATSVASYSLRARDAGGVAMPLTWDELGKVKSGDA
FTIRNVPARLQRRRGDPWAEFERIEQGLPKID
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgcaaacttatcgacgcaaacgccgatttgccgatacgcccgaaccggcagca
ggcggtaaacgtggcaaggcgccgattttcgtcgtgcagttgcaccacgcttcgcatcgg
cattacgatttccgcctggaagtggatggcgcgctgaaaagttgggcggtgccgaaaggg
cccagccttgatccttcggtgaaaaggttggcggtggaagtcgaagatcatccgttgtct
tatgcgaaattttccggcgatattcccaaaggcaactacggcgccggacacgtcgatatt
ttcgactacggaacctggcaagcagaaggcagcgcacgcgccgacttgaaacgcggcgaa
ttgaagttcgtgctacacggcaagattctgcgtggatcatgggtgctggtgcggacgaaa
cgcgaagccgccaaaccgcaatggctgttgatcaaacatcacgacgaattttcgagcaaa
agcgaggcggatgattttgtagcggatgagccgaaaaaacctgttgcggaaattggcaaa
acttcgcgtcgaaaaaaatccgcctcattgaaaaatggcgcctttgcaccggaattatgt
cgcaccacgacagccccgcctgctggcgacgcgtggctgcacgaagcaaaatgggacggc
tatcgcctgttgacgacggtcgtggcaggcgtggtcagactatggtcgcgcaatgcgatc
gaatggaccgtacgcctgccggaaatcgtcgcggcaattcgcaaacttaaactggacaac
gcgaagctcgacggtgaattggtcgtgctggatggaaatcgagccgacttcaacaagttg
caagcgcgactggccggagagaacgatgccacgttgatctacatgcttttcgatgcgccg
tatcttgatggcgaatcgctacgcgacgttccgttgatcgagcgcaagcaacgtttgtcg
aaattgctgcgcaagtcaaagcagcaggtcttgcgattcagtgagcatcatgtcggggcg
ggcgaaaccgtcatgcagcaggccgtggcggcgggaattgaaggtatcgtcagcaagcgt
ttagacagtccctatcgtggcgggcgtaatggtgactggataaagatcaaagcgcgcatg
agtgacgaattcgcggttatcggtttcagccagccgcaaggtattcgttcgggtatcggc
gcgctgttgttggggaaacctgctgaagacggctttcgttatgtcggtcgtgtcggcacc
ggattctccgccgaaaagttgcgagaattacgcacgatgctcgacaagaatattgtcgat
aaagctccatcagatacatccttgctcgagagaaaataccgcaacaatgcggtatgggtg
tcgccgaaactggtcgtggaagtttattttcagggcaggggaggcaacgggctgttgcgc
cagcctgcgttcaagactttgcgcgaggacaagactgtgcatgatttgagcgagaagact
tcgtctaaaaaaacatcggcgaaggcgcagccggataaagcgcaaaaagcagaaccgaag
cgcgccaccccatcgacgggtgaaattgaaatcactcacccggaacgcaaggcaatcccg
gcgctgaatgtgaccaagcaggatgtggcggattattattcgctagtctcggcgtggttg
ttaccggagatcgccaatcgtccactgtcggtattgcgctgtcccgacggtatccactcc
gcatgttttttccagaagcatgcgggcaagggatggggcgagcatatcaagtcgatcacg
atcaaggaaaagaacggcagcgccgaatatctatgcatcgacgatgtattgggtttgctc
gaactggtgcaaatgaatgtgctcgaactgcatccctggaacacgcacgccagggatttg
aagcgcgcggatcgcctggtgtttgatctcgatccgcatgcgtcggtgacttggaaacgc
atggtggcggcggcacgcatattacgcaaacaccttgcatcgatcggtttggaatcgttc
gtgcgcaccagcggcggcaagggtttgcatgtggttgtgccattgcgaccgaccgtggca
tgggcgaaggtgaaagcctttgcgcaagcaattgccgtggcgatgtcgacgctgcagccc
gatgaattcgtcgcggttgccggagacaagaatcgtcaagggaaaatatttatcgactgg
ctacgcaacaccgcgggcgcgactagcgtggcgtcgtattctctgcgcgcgcgcgacgca
ggcggtgtcgcgatgccgttgacgtgggacgagctcggcaaggtgaaaagtggcgatgcc
ttcaccatcagaaatgtaccggcgcgattgcaacgtcgccggggcgacccgtgggcggag
ttcgagcgcatcgaacaaggcctgccaaagatcgattga
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