KEGG   Pseudolysobacter antarcticus: ELE36_09695
Entry
ELE36_09695       CDS       T06010                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xbc  Pseudolysobacter antarcticus
Pathway
xbc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xbc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ELE36_09695 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xbc03400]
    ELE36_09695 (ligD)
Enzymes [BR:xbc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ELE36_09695 (ligD)
DNA repair and recombination proteins [BR:xbc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ELE36_09695 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme TraF
Other DBs
NCBI-ProteinID: QBB70616
UniProt: A0A411HJA5
LinkDB
Position
2294757..2297195
AA seq 812 aa
MPLQTYRRKRRFADTPEPAAGGKRGKAPIFVVQLHHASHRHYDFRLEVDGALKSWAVPKG
PSLDPSVKRLAVEVEDHPLSYAKFSGDIPKGNYGAGHVDIFDYGTWQAEGSARADLKRGE
LKFVLHGKILRGSWVLVRTKREAAKPQWLLIKHHDEFSSKSEADDFVADEPKKPVAEIGK
TSRRKKSASLKNGAFAPELCRTTTAPPAGDAWLHEAKWDGYRLLTTVVAGVVRLWSRNAI
EWTVRLPEIVAAIRKLKLDNAKLDGELVVLDGNRADFNKLQARLAGENDATLIYMLFDAP
YLDGESLRDVPLIERKQRLSKLLRKSKQQVLRFSEHHVGAGETVMQQAVAAGIEGIVSKR
LDSPYRGGRNGDWIKIKARMSDEFAVIGFSQPQGIRSGIGALLLGKPAEDGFRYVGRVGT
GFSAEKLRELRTMLDKNIVDKAPSDTSLLERKYRNNAVWVSPKLVVEVYFQGRGGNGLLR
QPAFKTLREDKTVHDLSEKTSSKKTSAKAQPDKAQKAEPKRATPSTGEIEITHPERKAIP
ALNVTKQDVADYYSLVSAWLLPEIANRPLSVLRCPDGIHSACFFQKHAGKGWGEHIKSIT
IKEKNGSAEYLCIDDVLGLLELVQMNVLELHPWNTHARDLKRADRLVFDLDPHASVTWKR
MVAAARILRKHLASIGLESFVRTSGGKGLHVVVPLRPTVAWAKVKAFAQAIAVAMSTLQP
DEFVAVAGDKNRQGKIFIDWLRNTAGATSVASYSLRARDAGGVAMPLTWDELGKVKSGDA
FTIRNVPARLQRRRGDPWAEFERIEQGLPKID
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgccgctgcaaacttatcgacgcaaacgccgatttgccgatacgcccgaaccggcagca
ggcggtaaacgtggcaaggcgccgattttcgtcgtgcagttgcaccacgcttcgcatcgg
cattacgatttccgcctggaagtggatggcgcgctgaaaagttgggcggtgccgaaaggg
cccagccttgatccttcggtgaaaaggttggcggtggaagtcgaagatcatccgttgtct
tatgcgaaattttccggcgatattcccaaaggcaactacggcgccggacacgtcgatatt
ttcgactacggaacctggcaagcagaaggcagcgcacgcgccgacttgaaacgcggcgaa
ttgaagttcgtgctacacggcaagattctgcgtggatcatgggtgctggtgcggacgaaa
cgcgaagccgccaaaccgcaatggctgttgatcaaacatcacgacgaattttcgagcaaa
agcgaggcggatgattttgtagcggatgagccgaaaaaacctgttgcggaaattggcaaa
acttcgcgtcgaaaaaaatccgcctcattgaaaaatggcgcctttgcaccggaattatgt
cgcaccacgacagccccgcctgctggcgacgcgtggctgcacgaagcaaaatgggacggc
tatcgcctgttgacgacggtcgtggcaggcgtggtcagactatggtcgcgcaatgcgatc
gaatggaccgtacgcctgccggaaatcgtcgcggcaattcgcaaacttaaactggacaac
gcgaagctcgacggtgaattggtcgtgctggatggaaatcgagccgacttcaacaagttg
caagcgcgactggccggagagaacgatgccacgttgatctacatgcttttcgatgcgccg
tatcttgatggcgaatcgctacgcgacgttccgttgatcgagcgcaagcaacgtttgtcg
aaattgctgcgcaagtcaaagcagcaggtcttgcgattcagtgagcatcatgtcggggcg
ggcgaaaccgtcatgcagcaggccgtggcggcgggaattgaaggtatcgtcagcaagcgt
ttagacagtccctatcgtggcgggcgtaatggtgactggataaagatcaaagcgcgcatg
agtgacgaattcgcggttatcggtttcagccagccgcaaggtattcgttcgggtatcggc
gcgctgttgttggggaaacctgctgaagacggctttcgttatgtcggtcgtgtcggcacc
ggattctccgccgaaaagttgcgagaattacgcacgatgctcgacaagaatattgtcgat
aaagctccatcagatacatccttgctcgagagaaaataccgcaacaatgcggtatgggtg
tcgccgaaactggtcgtggaagtttattttcagggcaggggaggcaacgggctgttgcgc
cagcctgcgttcaagactttgcgcgaggacaagactgtgcatgatttgagcgagaagact
tcgtctaaaaaaacatcggcgaaggcgcagccggataaagcgcaaaaagcagaaccgaag
cgcgccaccccatcgacgggtgaaattgaaatcactcacccggaacgcaaggcaatcccg
gcgctgaatgtgaccaagcaggatgtggcggattattattcgctagtctcggcgtggttg
ttaccggagatcgccaatcgtccactgtcggtattgcgctgtcccgacggtatccactcc
gcatgttttttccagaagcatgcgggcaagggatggggcgagcatatcaagtcgatcacg
atcaaggaaaagaacggcagcgccgaatatctatgcatcgacgatgtattgggtttgctc
gaactggtgcaaatgaatgtgctcgaactgcatccctggaacacgcacgccagggatttg
aagcgcgcggatcgcctggtgtttgatctcgatccgcatgcgtcggtgacttggaaacgc
atggtggcggcggcacgcatattacgcaaacaccttgcatcgatcggtttggaatcgttc
gtgcgcaccagcggcggcaagggtttgcatgtggttgtgccattgcgaccgaccgtggca
tgggcgaaggtgaaagcctttgcgcaagcaattgccgtggcgatgtcgacgctgcagccc
gatgaattcgtcgcggttgccggagacaagaatcgtcaagggaaaatatttatcgactgg
ctacgcaacaccgcgggcgcgactagcgtggcgtcgtattctctgcgcgcgcgcgacgca
ggcggtgtcgcgatgccgttgacgtgggacgagctcggcaaggtgaaaagtggcgatgcc
ttcaccatcagaaatgtaccggcgcgattgcaacgtcgccggggcgacccgtgggcggag
ttcgagcgcatcgaacaaggcctgccaaagatcgattga

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