KEGG   Xenorhabdus bovienii SS-2004: XBJ1_2837
Entry
XBJ1_2837         CDS       T01186                                 
Symbol
ycfD
Name
(GenBank) putative enzyme with RmlC-like domain
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
xbo  Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:xbo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:xbo03009]
    XBJ1_2837 (ycfD)
Enzymes [BR:xbo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     XBJ1_2837 (ycfD)
Ribosome biogenesis [BR:xbo03009]
 Prokaryotic type
  ribosomal protein modification factors
   XBJ1_2837 (ycfD)
SSDB
Motif
Pfam: JmjC_2 ROXA-like_wH Cupin_1 AraC_binding
Other DBs
NCBI-ProteinID: CBJ81961
UniProt: D3V7Z9
LinkDB
Position
2786937..2788058
AA seq 373 aa
MDYQLNLDWQSFLQNYWQKRPLLIKQGFQQFIDPLSPDELAGLAMENEIDSRLVSQKNGR
WEVSHGPFEIYDHLGEKDWSLLVQAVNHWHLPSSALMKPFRMLSDWRMDDLMVSFSVSGG
GVGPHLDQYDVFIIQGQGRRRWRVGEKIPMKQHCPHPDLLQVDPFEAIIDEEMLPGDILY
IPPGFPHEGYAIEDSLNYSVGFRAPNARELFSGFADYILANELGSHRYSDPELALRDNPA
LIQSNELDTLRIMMRDLLEQPTTFQNWFGEFISQSRHELDIAPPEPPYESDEIYELLKQG
ESLNRLSGLRVLRVGDQCFVNGELIDTPHIHAADALCQHDRVDAGILGDAIDDVRFISLL
AALVNSGYWYFND
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggattatcagctaaatctggactggcaatcgtttttgcagaactattggcaaaaacgg
ccactgctgattaagcagggtttccagcaatttatcgatcccctttctcccgatgaactg
gcgggactggcgatggaaaatgaaatcgatagccgtttggtcagtcagaaaaacggtcgt
tgggaagtttcacatggtccatttgaaatttatgaccatttaggcgaaaaggattggtca
ttacttgtacaagctgttaatcactggcatcttccttcttctgcccttatgaaaccattt
cgtatgctgtccgactggcgaatggatgatctgatggtctctttctctgtatcaggcggt
ggtgtcggtcctcaccttgaccaatatgatgtctttatcattcagggacagggacgccgt
cgctggcgtgtaggcgaaaaaataccaatgaaacagcattgccctcaccctgatttatta
caggttgatccttttgaggcaatcattgatgaagaaatgttgccaggggatattctttat
attccccctggattcccgcacgaaggctacgctatcgaggattcactaaattattccgta
ggcttccgcgcacccaatgcccgtgaactcttcagtggttttgctgattatattctggca
aatgaattggggagccatcgttatagcgatccagagctggcattgcgtgataatccagcg
ctaattcagtcaaatgaactggatactctgcgaataatgatgcgcgatctgctggaacaa
ccaacaacttttcaaaattggtttggcgaatttatctcccaatcacgccatgagttggac
attgccccaccagaacctccttatgaaagcgatgaaatttatgaactgctgaagcaaggt
gaaagtttgaatcgcttaagtgggttacgcgtcctgcgagttggtgatcaatgttttgtc
aatggcgaattaatagatactcctcatatccatgccgctgatgcgctttgtcagcatgat
cgagtggatgcgggtattctgggtgatgccattgatgatgttcgttttatcagcctgcta
gctgcgttggtcaatagcggttactggtattttaatgattaa

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