Xenorhabdus budapestensis: HGO23_01510
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Entry
HGO23_01510 CDS
T07176
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HGO23_01510 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xbu03021
]
HGO23_01510 (rpoC)
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_01510 (rpoC)
Enzymes [BR:
xbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HGO23_01510 (rpoC)
Transcription machinery [BR:
xbu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HGO23_01510 (rpoC)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HGO23_01510 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QTL40132
LinkDB
All DBs
Position
365285..369508
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNMDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEVKDGEGNVTVNTGLVDTTIGRAILWMIVPKGLPYSLINQPLGKKA
ISKMLNTCYRILGLKPTVILADQTMYTGFAYAARSGVSVGIDDMVIPEKKEGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSSETVINRNGEEEQQVSFN
NIFMMADSGARGSAAQIRQLAGMRGLMATPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGSADILVPRNTLLNEKWCDLLEENSVDSVKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGQLKL
TNAKFVTNSVGKLVITSRNTELRLIDDFGRTKESYKVPYGSVLAKGDGEAVTGGETVANW
DPHTMPVVSEVSGIIQFYDMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGMAISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVARYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSSEFLEGEQVEYARVKVANRKLEQDGKVPATFHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHENEVVE
APQVSVDEATANLAELLNAGFGSSNNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcctctccagatatgatccgttcgtggtcattcggggaagtaaaaaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcacgt
attttcgggccagtaaaagattatgaatgcttgtgtggtaaatacaagcgtttgaaacac
cgtggtgtgatttgtgagaagtgtggtgttgaggttactcagactaaagttcgccgtgaa
cgtatggggcacatcgaactggcatctccgactgctcacatctggtttctgaaatctctg
ccatcccgtatcggtttgttgctggatatgccgctgcgcgacattgaacgcgtattgtac
ttcgaatcctatgtggttgttgaaggcggtatgaccagccttgagcgcagccagatcctg
actgaagaacagtatctggatgcactggaagaattcggtgatgaattcgacgctaaaatg
ggtgcggaagcgatccaatctttgttgaagaacatggatctggaaaacgaatgtgaaacc
ctgcgtgaagaactgaatgaaaccaactctgaaactaagcgcaaaaagctgactaagcgc
attaaattgttggaagctttcattcagtctggtaacaaaccagagtggatggttctgacc
gttctgccagttctgccaccggatctgcgtccattggttccactggatggtggtcgtttc
gcaacttcagacctgaacgatctgtatcgtcgcgttattaaccgtaacaaccgtctgaaa
cgcctgttggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgcattgctggacaacggtcgtcgcggtcgtgcgattacaggttccaat
aaacgtcctctgaaatccttggcagacatgattaagggtaaacaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttctgtaattaccgtaggtccatac
ctgcgtctgcatcagtgtggtcttcctaagaagatggcactggagctgttcaagccattc
atttatggcaagctggaactgcgtggtctggcgactaccatcaaagcagccaagaaaatg
gttgaacgtgaagaagcggttgtatgggatatccttgatgaggttatccgtgagcacccg
gttctgttgaaccgtgcaccaacccttcaccgtctgggtattcaggcattcgaaccagtt
ctgatcgaaggtaaggcaatccagctgcacccgctggtgtgtgcggcttataacgccgac
ttcgacggtgaccagatggctgttcacgtgccgttgacactggaagctcagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccagcgagtggtgaaccaattatc
gttccatctcaggacgttgtattgggtctgtactacatgactcgtgactgtgttaacgcg
aaaggcgaaggcatggttctgaccggtcctaaagaagcagagcgcgtataccgtgcaggt
ctggcttctctgcacgcccgtgtcaaagttcgtatcactgaagaagtgaaagatggtgaa
ggtaatgtcaccgttaatacagggttggttgatacgaccatcggtcgtgccatcctgtgg
atgattgtaccaaaaggtctgccatactcactgattaaccagccactgggtaaaaaagct
atctctaaaatgctgaatacctgttaccgcatactgggcttgaaaccaaccgttattttg
gctgaccagaccatgtataccggttttgcttacgctgcccgttcaggggtatccgtaggt
attgatgatatggttattcctgagaagaaagaaggcatcattgctgaagcagaagctgaa
gttgccgaaattcaggaacagttccagtcaggtctggtaactgcgggtgaacgttataac
aaggttatcgatatctgggctgcggcgaacgaacgtgttgctaaggcgatgatggaaaac
ctctcttctgaaactgttattaaccgtaatggtgaagaagagcagcaggtttccttcaac
aatatctttatgatggcagactccggtgctcgtggttctgcggctcagatccgtcagttg
gcgggtatgcgtggtctgatggcaacgccagatggttccatcatcgaaaccccaatcact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcaactcacggtgctcgt
aaaggtcttgcggataccgcattgaagaccgcgaactccggttacctgacacgtcgtctg
gttgatgttgctcaagacctggttatcactgaagatgactgtggtactcacgacggtatc
ctgatgactccggtcattgagggtggtgacgttaaagaacctctgcgtgaacgtgtactg
ggtcgtgtgactgctgaagacgttctgaaaccgggttcagcggatattctggttccacgt
aatacactgttgaacgaaaaatggtgtgatctgttagaagaaaattccgttgacagtgtg
aaagtacgttccgtagttagttgtgaaactgatttcggtgtttgtgcaaaatgttacgga
cgtgaccttgctcgtggtcatatcatcaacaaaggtgaagcagttggtgttatcgcggca
cagtcaatcggtgaaccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcattcaggtacgtaacaaaggtcagctgaaactg
actaacgcaaaatttgttactaactctgtgggcaaactggttattacttcccgtaatacc
gaattgcgcctgattgatgacttcggtcgtacaaaagaaagctataaagtaccttacggc
tcggtattggctaaaggtgatggtgaagcagtaactggcggtgaaaccgttgcgaactgg
gacccacacaccatgccagtcgtgagtgaagtgtccggtatcatccagttctacgatatg
gttgatggtcaaaccatcacccgtcaaacggatgaactgaccggtctgtcatcactggta
gttctggatagcgcagagcgtactggtagcggtaaagacttgcgtccggctctgaaaatc
gtagatgctcagggtaacgatgttctgatcccaggtacagatatgcctgctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcatggctatctctgcgggtgatacg
ttggcgcgtattcctcaggaatctggcggtactaaagatatcaccggtggtctgccacgc
gttgcagacctgttcgaagctcgtcgtccgaaagagcctgctattctggcagagatcagc
ggtatcgtttccttcggtaaagaaaccaaaggtaagcgccgtctggtaatcagcccactg
gatggtagtgatgcttacgaagagatgatccctaaatggcgtcagctcaacgtgttcgaa
ggtgaggttgttgaacgtggtgacgtgatctccgatggcccagaatctccacatgacatt
ctgcgtttgcgaggtgttcatgctgttgctcgttacatcaccaacgaagttcaggaagtt
taccgtttgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagctaccattgcaagtgcgggaagttctgaattccttgaaggcgagcaggtt
gaatacgcacgcgttaaagttgctaaccgtaagctggagcaggacggcaaagtacctgcg
actttccaccgtgatctgctgggtatcaccaaagcgtcactggcaacagaatctttcatc
tctgcggcgtcgttccaggaaacaacccgcgtattgactgaagcagctgttgcaggtaaa
cgtgatgaattgcgtggtctgaaagagaacgttattgtgggtcgcttgatccctgcgggt
acaggttatgcttaccatcaggatcgtatgcgtcgtcgtcacgaaaatgaagtggttgaa
gcaccacaagtcagtgttgacgaagccactgcaaaccttgctgaattgttgaatgctggt
ttcggtagcagtaataacgagtaa
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integrated database retrieval system
