Xanthomonas campestris pv. campestris 8004: XC_1475
Help
Entry
XC_1475 CDS
T00247
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XC_1475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcb03019
]
XC_1475
03009 Ribosome biogenesis [BR:
xcb03009
]
XC_1475
Enzymes [BR:
xcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XC_1475
Messenger RNA biogenesis [BR:
xcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XC_1475
Ribosome biogenesis [BR:
xcb03009
]
Prokaryotic type
rRNA helicases
XC_1475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
P-loop_SecA
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AAY48543
UniProt:
A0A0H2X5V2
LinkDB
All DBs
Position
1773724..1775652
Genome browser
AA seq
642 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPD
GERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
AAASKPKFPRGPRPAGRPNRPMDRAGAPHRKGPPKPRGPRSE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcagatgctgtg
atgaaggcggttgccgccgtcggctacgagaccccttcgccgatccaggccgccaccatc
ccggcgctgctggccggtcgcgacgtgctcggccaggcccagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaatgccgacctgaaccaggtcaagccgcaggcg
ctggtgctggcgccgacgcgcgagctggccatccaggtggccgaagccttccagaaatat
gccgaagccatccccggtttccgcgtgctgccggtgtacggcggccagccgtatgcccag
cagctcagcgcgctcaagcgcggcgtgcacgtggtggtgggcaccccgggccgggtgatc
gatcacctggaccgcggcaccctggacctgtcgcagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggaaaagcgccaggtggcgttgttctccgcgaccatgccgccggcgatccgccgcatt
gcgcagacctatctgaaggaccctgccgaagtcaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcggcctgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccgct
accgaagagctggcgcaaaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggccgcccgtgaaaagaccattgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggaacgcgtcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgtgccggccgcaacggcgacgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccctggccggc
ggtcagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgacatcgctgcggcaatggccaagttgctgcagggcgacgccccgttcctgctg
actccgccggtgcgtggcgcgcgcgaagacttcgcaccgcgtgagcgcaacgaccgcgcc
gaccgtggcgagcgcccgcgcttcgagcccaagttcgagcgtggcccgcgtgcgcccgac
ggcgagcgtggtgcacgtccgccgcgtccggaccgcccggcctatggtgaagacgccggc
gccgagcgtccgcgccgcgagccgagcgcgccgcgcggcgagccggagttcggcatggag
agctaccgcatcgaagtgggccacacccatggcgtgaagccggccaacatcgtcggcgcc
atcgccaacgaagccggcctggaaagccgctacatcggccgcatcgacatccaggacgat
tactcgatcctggatctgccggccgacatgccgcgcgaactgctgacccacctgaagaag
gtctgggtgtcgggccagcagctcaacatgcgcaagctggaagagggcgaggcggccgct
gcggcggcgtccaagcccaagttcccgcgtggccccaggccggcgggccggcccaaccgg
ccgatggaccgcgctggcgcgccgcaccgcaagggtccgcccaagccgcgtggcccgcgt
agcgagtaa
DBGET
integrated database retrieval system
