Xanthomonas campestris pv. campestris 8004: XC_3848
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Entry
XC_3848 CDS
T00247
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XC_3848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcb03019
]
XC_3848
Enzymes [BR:
xcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XC_3848
Messenger RNA biogenesis [BR:
xcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XC_3848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AAY50888
UniProt:
Q4UPY5
LinkDB
All DBs
Position
complement(4545008..4546729)
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AA seq
573 aa
AA seq
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MSDKPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFRE
AREQRAADEARRGGGRSGPGGASRSGSGGGRRDGAGADGKPRPPRRKPRVEGEADPAAAP
SETPVVVAAAAETPAVTAAEGERAPRKRRRRRNGRPVEGAEPVVASTPVPAPAAPRKPTQ
VVAKPVRAAAKPSGSPSLLSRIGRRLRSLVSGS
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgactttttcctcgttcgacctgcatccggcgctg
gtcgccgggctggagagcgccgggtttacgcgctgcacgccgatccaggcgctgaccctg
ccggtcgccctgccgggcggcgacgtcgccggccaggcccagaccggcaccggcaaaacg
ctggcgttcctggtcgcggtgatgaaccgcctgctgatccgcccggcgctggccgaccgc
aagccggaagatccgcgcgccctgatcctggcgcccacccgcgagctggccatccagatc
cacaaggacgcggtcaagttcggcgccgacctggggctgcgctttgcgctggtctacggt
ggcgtggactacgacaagcagcgcgagctgctgcagcagggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtcaaacagcacaaggtggtctcgctgcacgcctgc
gaaatctgcgtactggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccgccagacgctgctgttctcggcc
acgctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctc
gtcgtggaaaccgagaccatcaccgccgcgcgggtgcgtcagcgcatctatttcccctcc
gacgaagagaagcagacgctgctgctgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggcgttcgtggagcgggtggcgcgcaccctggagcggcac
ggctaccgcgtgggcgtgttgtccggcgacgtgccgcagaagaagcgcgagtcgttgctg
aaccgcttccagaagggccagctggaaatcctggtggccaccgacgtggccgcgcgcggc
ctgcacatcgatggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtgcatcgcatcgggcgcaccgcgcgcctgggcgaggagggcgatgcgatcagcttc
gcctgcgagcgttatgcgatgagcctgccggacatcgaggcctacatcgagcagaagatc
ccggtcgagccggtgactaccgagctgctgaccccgttgccgcgcacaccgcgcgcaaca
gtggaaggtgaagaggtcgacgacgacgctggcgacagcgtgggcacgatcttccgcgaa
gcacgcgagcagcgtgcggccgacgaagcgcgtcgtggcggtggccgtagcggtcccggc
ggcgcatcgcgtagcggcagtggcggcggtcgtcgcgacggcgccggtgccgatggcaag
ccgcgcccgccgcgtcgcaagccgcgcgtggaaggcgaggccgatccggccgcagcgccc
agcgagacgccagtggttgtcgctgctgccgcagaaactcctgccgtcacggcggccgaa
ggcgagcgcgcaccgcgcaagcgccgtcggcgtcgcaacggccgcccggtcgaaggtgcc
gagccggtggtggcatccacgcccgtgccggcccccgccgcgccgcgcaaacccacccag
gtcgtggccaagccggtacgtgccgcagccaagccgtcgggcagcccgtcgttgctgagc
cgcatcggacgcaggctgcgttcgttggtctccggcagctga
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