Xanthomonas campestris pv. campestris 8004: XC_4290
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Entry
XC_4290 CDS
T00247
Name
(GenBank) hemagglutinin
Organism
xcb
Xanthomonas campestris pv. campestris 8004
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
Autotransporter
Calx-beta
SprB
Big_9
Cadherin_5
NtrZ
Motif
Other DBs
NCBI-ProteinID:
AAY51325
UniProt:
A0A0H2XCW8
LinkDB
All DBs
Position
complement(5089547..5094775)
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AA seq
1742 aa
AA seq
DB search
MWTVNKQRRFLADATGGRARLVVMFVLFAMTLLAPGWAMAQASTYCPTLNATVVQGGSVQ
IDVTTCDGTGVDDIGVGWNGVQPAHGTIVVPNPSGAQGTQIVTYTHNGDNATSDTFPLED
GRSDIITVNITITPSQPTLSINDVSVNEGNAGTSNATFTVSLSQPAGAGGASFDIATADG
SAIAGVDYVASSLTGQTIPAGSSSATFTVLVNGDTLSEPNETFFVNVSNVSGAGVSDAQG
QGTIVNDDALPSLSIDDVSVNEGNSGTTTATFTVTLSAASGQTVSVNYASADGTATAGSD
YVARSGTLTFAPGTTAQGVAITVNGDTALEPNETFSVGLSGASNASIARATGAGTILNDD
VVVTVGPASLPAATAGSAYSQNLSASGGTAPYSFAVTAGALPAGLTLSAAGVLSGTPTAT
GSFNFTATATDSGGSPTSGNRAYTLTVAGATVTLPATSLPAGTAGQAYSGALNPATGGIP
PYTYAVTAGALPAGITLNGSSGALTGTPGSVGSFAFSVTATDSTSGTPSQGTRGYTLNIA
APPIVVAPSTLPAATRGTAYSQTLSASGGTAPYTYALASGALPAGLTLASNGTLSGTATV
EGSFNFTVTATDAGSFTANQAYSLTVAGPNLVLPASSLPAGTAGQAYSASITPATGGTAP
YSYALTAGALPTGVVVDVATGGLSGTPTVAGTFNFTLTVSDSTPSPAAQASRSYTLTIAA
PVIVVAPTALPAATRGTVYSQTLSASGGTAPYTYAVSAGNVPAGLTLASNGTLSGTATVE
GSFNFTVTATDANTFTASQAYAVTVAGPNLALPASSLPAGTAGQAYAATIAPATGGTAPY
SYALSAGVLPNGVVLDTATGGLSGMPTLSGTFNFTLTVTDSTPSPAAQASQSYTLSIAAP
VIVVAPTALPAATRGTAYSQVLTASGGTAPYTYEVNAGSAPAGLTLASNGTLSGNPTVEG
GFNFTVTATDANNFTASQAYVLTVASPNLALPASNLPAGTAGQAYTAAISPVTGGTAPYS
YALTAGALPSGVVLDAATGTLSGTPTVSGTFNFTLTVTDSTPSPAAQANQSYTLSIAGAT
LVPSQPTLPPAVRGTPYSQVLTATGGVAPYTYSVASGTLPAGLTLASNGVLSGTPTAEGS
TSFTIAVADAGNATATQAYTFTVSTAAPVAVADTAATMSDAAVTVPVTANDTGNITAIAI
ATAPTNGTAAVNGLELVYTPAAGFVGTDVVSYTVTGSGGTSAAATVTIAVNARPIAVSVT
AEAVPGAASQVDLTRDATGGPFVAAAVVAVLPASAGTATITQVGGAAAAAARTSGFVPAA
TAQASSPSFMLTFVANPAFVGQATVQFTLSNAFATSAAASVTFTVAPRRDPSVDAEVRGL
IDAQSESTRRFAKAQIDNFQRRLEATHRGGSTLSNAVTFQPTSHCRQADRGISAQPCSPD
TQDADNEFRDAPAMATGGTGGAQGQGDLGLWVGGAIRSGSLDRQANTNGVDFQTDGLSVG
ADYRLAPSLAVGAGLGWGRDDSDVGRNGSHSKATAYTMALYASFHPGKAFFFDTLVGYQL
LSYDLRRFVTDDASMAEGSRDGKQWIASLSSGADLQRGNLQITPYARVDVARATLDGYVE
DGIAPFALRYDDMDVATTTGNLGLRLEWRRDVAWGRLTPQVRVEYQRDFQGRGDATLGYA
DIIGGPVYRTGQNAFDRNRLMVGIGAALLTEQGLSTRLEYRGITDGDSGNDQTWMINLEK
KY
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
gtgtggacagtgaacaagcagcgtaggtttctagcggacgccaccggcggccgcgcacgt
ttggtcgtgatgtttgtcctgttcgcgatgacgctcttggcaccaggctgggcgatggcg
caagcctcgacctactgcccgaccttgaacgccactgtggtgcagggcggttcggtacag
atcgacgtaacgacctgcgatggcacgggggtagacgatatcggcgttggctggaacggt
gtgcaacctgcgcacggcacgatcgtcgttcccaacccaagcggcgcccagggcacgcag
atcgtcacctacacccataacggtgacaacgccaccagcgatacgttcccgctagaagat
ggccggagcgacatcatcactgtcaacatcaccatcaccccgagccagccgacgctgtcg
atcaacgacgtctcggtgaatgaaggcaatgccggcacgagcaatgccaccttcaccgtc
tcgctcagccagccggccggtgccggcggcgccagcttcgatatcgccaccgccgatggc
tcagccatcgcaggcgtggactacgtcgcctccagcctcaccgggcagaccatccccgct
ggtagtagcagcgcgactttcaccgtgctggtcaacggcgacacgctcagcgaacccaac
gagaccttcttcgtcaacgtcagcaacgtcagcggcgccggggtcagcgacgcccaaggc
cagggcaccatcgtcaacgacgatgcgctgccttcgctgtcgatcgacgacgtcagcgtc
aacgaaggcaacagcggcaccaccacggccaccttcacggtgaccctgagcgcggccagc
ggccagaccgtgtcggtcaattacgccagcgccgacggtactgccaccgccggcagcgac
tatgtcgcgcgttccggcaccctgacgttcgcgcccggcaccaccgcgcaaggcgtggcc
atcaccgtcaacggcgataccgcgctcgaacccaacgagaccttcagcgtcggcctgtcc
ggtgccagcaacgcaagcatcgcgcgcgccaccggcgccggcaccatcctcaacgacgac
gtggtggtgacggtcgggccggcatcgctgccggcggcgaccgcgggcagcgcctacagc
cagaacctgagcgccagcggcggcaccgcgccgtacagcttcgccgtcactgccggtgcg
ttgccggccgggctgaccctgagcgctgccggcgtgctgtccggcacgcccacggccacc
ggcagcttcaacttcaccgccaccgctaccgatagcggcggcagtcccaccagcggcaac
cgtgcctacacgttgaccgtggccggcgcgacggtgaccttgccggcgaccagcttgccg
gccggcactgcaggccaggcttattcgggggcgctcaacccagcgaccggcggcattccg
ccgtatacctacgccgtcactgccggcgccctgccggcgggcatcacgctcaatggcagc
agcggcgccttgaccggcacccccggcagcgtgggcagctttgccttcagcgtgaccgcc
accgacagcaccagcggcacgccctcgcagggcacacgcggttacaccttgaacatcgcc
gcgccgccgattgtggttgcgccgtccacgctgccggccgccacgcgtggcactgcctac
agccagacgctgagcgccagtggcggcaccgcgccgtacacctacgcactcgccagtggc
gcattgccggccggcctcaccctggccagcaacggcacgctgtcgggtaccgcaacggtg
gaaggcagcttcaacttcaccgtgaccgccaccgatgcggggagcttcaccgccaatcag
gcctacagcctgaccgtggctggcccgaacctggtgttgccggcaagcagcttgccggca
ggtaccgccgggcaggcgtactccgcgtcgatcacgcccgccacgggcggcaccgcgcct
tacagctatgcactgaccgccggtgcgttgccgacgggtgtggtcgtggacgtggcgacc
ggtggactcagcggcacgccgaccgtggcgggcacgttcaacttcaccctgaccgtgtcc
gacagcacgcccagcccggcggcgcaggccagccgcagctacacgctgaccatcgcagca
cctgtcatcgtggtcgcgcccactgcgctgccggcggccacgcgcggcacggtctacagc
cagacgctcagcgccagcggcggaaccgcgccatacacgtatgccgtcagcgcgggcaac
gtgccggctggcctcaccctggccagcaacggcacgctgtccggcaccgcgacggtggaa
ggcagcttcaacttcaccgtgactgcgaccgatgcaaacaccttcaccgcttcgcaggcc
tatgcagtgacggtggccggcccgaacctggcgttgccggcgagcagcttgccggcaggt
acggcggggcaggcctacgcggcgacgattgctcctgccaccggcggcaccgcgccctac
agctatgcactgagcgccggcgtattgcccaacggcgttgtcctcgatacggcgaccggc
ggcctcagcggcatgccgaccctgtctggcacgttcaacttcaccctgactgtcaccgac
agcacgcccagcccggctgcgcaggccagccagagttacacgctgagcattgcggcacct
gtcatcgtggtcgcgcccactgcgctaccggctgcaacccgcggcacggcctacagccaa
gtactgaccgccagcggcggcaccgcgccgtacacctatgaggtgaacgcaggcagtgca
ccagctggcctcaccttggccagcaacggcacgctgtccggtaacccgacggtggaaggc
ggcttcaatttcaccgtgacggcgaccgacgcgaacaacttcaccgcgtcgcaggcctat
gtactgacggtggccagcccgaacctggccttgccggccagcaacttgccggccggtacg
gcggggcaggcctacacggcggcgatttcgccggtgaccggcggcactgcgccgtacagc
tatgcactgaccgcgggcgcattgccgagcggtgtggtgctggacgctgcgaccggcacg
ctcagcggtacgccaacggtgtctggcacgttcaacttcaccctgactgtcaccgacagc
acgcccagcccggccgcgcaggccaaccagagctacacgctgagcattgccggcgccacg
ttggtacctagtcaacccacgctgccgccagcggtgcgcggtacgccgtacagccaggtg
ttgaccgccaccggtggtgttgcgccgtacacctacagcgttgccagcggcaccttgccg
gccggactgacgctggcgagcaacggcgtgttgtcaggcacgcccaccgccgaaggcagc
acgtccttcaccatcgcggtggccgatgccggcaacgctactgcgacgcaggcgtacacc
ttcacggtgagcacggcggccccggttgccgtggccgataccgcagcgaccatgagcgat
gcggcggtgacggtgccagtgaccgccaacgacaccggcaacatcactgcgatcgccatt
gcgaccgcgccgaccaacggcaccgccgcggtcaatgggctggagctggtgtacacgccg
gcggccgggtttgtcggcaccgatgtggtgagctacacggtcaccggcagcggtggaacc
tcggccgcagcaacggtgaccatcgccgtcaatgcgcgcccgatcgccgtgtcggtcacc
gccgaggcggtgccgggtgcggcctcgcaggtcgatctgacccgtgatgccaccggcggg
ccgttcgtggccgccgcggtggtcgcagtgctgccggcctcggccgggaccgccaccatc
acccaggtgggtggtgcagcggcggcagcggcgcgcacttccggctttgtgcctgcggcc
actgcgcaggcttcttcacccagcttcatgctgaccttcgtggcgaacccggctttcgtc
ggtcaggccaccgtgcagttcaccttgtccaacgcgttcgccacctcggcggcggcaagc
gtgaccttcaccgtggcgccgcggcgcgacccgagtgtggatgcggaagtgcgtggcctg
atcgatgcgcagtccgagtcgacgcggcgcttcgccaaggcgcagatcgacaacttccag
cgccgtctggaagccacccaccgtggcggcagcacgctgagcaatgcggtgaccttccag
ccgacctcgcattgccgccaggccgatcgcggcatcagcgcgcagccgtgcagcccggac
acccaggatgccgacaacgagttccgcgatgcgccagcgatggcgaccggcggcaccggc
ggtgcgcagggccagggcgacctgggcctgtgggtgggcggtgcgatccgctccggcagc
ctggacaggcaggccaacaccaacggcgtggacttccagaccgatggcttgagcgtgggt
gcggactaccggctggcgccgtcgctggcagtgggtgcgggcctgggttggggccgcgac
gacagcgatgtaggcaggaacggcagccactccaaggccaccgcctacaccatggcgctg
tatgccagcttccatccgggcaaggcgtttttcttcgacaccctggtgggttatcagttg
ctgtcttacgacctgcgtcgtttcgtcaccgacgacgcttcgatggccgaaggcagccgc
gacggcaagcagtggatcgcctcgctgtccagcggtgcagacctgcaacgcggcaatctg
cagatcaccccgtatgcgcgggtggatgtggcgcgggcaaccctggatggctacgtcgaa
gatggcatcgcgccgttcgcgctgcgctatgacgacatggatgtggccaccaccaccggc
aacctgggcctgcgcctggaatggcgccgcgatgtggcctggggacgcctgaccccgcag
gtccgcgtggagtatcagcgcgacttccagggccgcggcgacgcaacgctgggctatgcc
gacatcatcggtggcccggtgtatcgcaccggtcagaacgcgttcgatcgcaaccgcctg
atggtcggtatcggtgcggccttgctgaccgaacaaggcttgtcgacgcggctggaatac
cgcggcatcaccgacggcgacagcggcaacgatcagacctggatgatcaacctggaaaag
aaatactga
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