Xanthomonas campestris pv. campestris ATCC 33913: XCC2642
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Entry
XCC2642 CDS
T00083
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCC2642 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcc03019
]
XCC2642 (deaD)
03009 Ribosome biogenesis [BR:
xcc03009
]
XCC2642 (deaD)
Enzymes [BR:
xcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCC2642 (deaD)
Messenger RNA biogenesis [BR:
xcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCC2642 (deaD)
Ribosome biogenesis [BR:
xcc03009
]
Prokaryotic type
rRNA helicases
XCC2642 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
P-loop_SecA
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AAM41914
UniProt:
Q8P7G9
LinkDB
All DBs
Position
complement(3133068..3134996)
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AA seq
642 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGNAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPD
GERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
AAASKPKFPRGPRPAGRPNRPMDRAGAPHRKGPPKPRGPRSE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcagatgctgtg
atgaaggcggttgccgccgtcggctacgagaccccttcgccgatccaggccgccaccatc
ccggcgctgctggccggtcgcgacgtgctcggccaggcccagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaatgccgacctgaaccaggtcaagccgcaggcg
ctggtgctggcgccgacgcgcgagctggccatccaggtggccgaagccttccagaaatat
gccgaagccatccccggtttccgcgtgctgccggtgtacggcggccagccgtatgcccag
cagctcagcgcgctcaagcgcggcgtgcacgtggtggtgggcaccccgggccgggtgatc
gatcacctggaccgcggcaccctggacctgtcgcagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggaaaagcgccaggtggcgttgttctccgcgaccatgccgccggcgatccgccgcatt
gcgcagacctatctgaaggaccctgccgaagtcaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcggcctgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccgct
accgaagagctggcgcaaaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggccgcccgtgaaaagaccattgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggaacgcgtcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgtgccggccgcaacggcgacgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccctggccggc
ggtcagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgacatcgctgcggcaatggccaagttgctgcaggggaacgccccgttcctgctg
actccgccggtgcgtggcgcgcgcgaagacttcgcaccgcgtgagcgcaacgaccgcgcc
gaccgtggcgagcgcccgcgcttcgagcccaagttcgagcgtggcccgcgtgcgcccgac
ggcgagcgtggtgcacgtccgccgcgtccggaccgcccggcctatggtgaagacgccggc
gccgagcgtccgcgccgcgagccgagcgcgccgcgcggcgagccggagttcggcatggag
agctaccgcatcgaagtgggccacacccatggcgtgaagccggccaacatcgtcggcgcc
atcgccaacgaagccggcctggaaagccgctacatcggccgcatcgacatccaggacgat
tactcgatcctggatctgccggccgacatgccgcgcgaactgctgacccacctgaagaag
gtctgggtgtcgggccagcagctcaacatgcgcaagctggaagagggcgaggcggccgct
gcggcggcgtccaagcccaagttcccgcgtggccccaggccggcgggccggcccaaccgg
ccgatggaccgcgctggcgcgccgcaccgcaagggtccgcccaagccgcgtggcccgcgt
agcgagtaa
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