Xanthomonas citri subsp. citri Aw12879: XCAW_01360
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Entry
XCAW_01360 CDS
T02519
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCAW_01360 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xci03019
]
XCAW_01360 (srmB)
03009 Ribosome biogenesis [BR:
xci03009
]
XCAW_01360 (srmB)
Enzymes [BR:
xci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCAW_01360 (srmB)
Messenger RNA biogenesis [BR:
xci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCAW_01360 (srmB)
Ribosome biogenesis [BR:
xci03009
]
Prokaryotic type
rRNA helicases
XCAW_01360 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
adh_short
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGI07162
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All DBs
Position
1524931..1526829
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AA seq
632 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAALAKLLQGDAPFLLTPPVRGVREESAPRQRNERADRGERPRFEPTFERGPRADG
ERAARPPRGDDTGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLES
RYIGRIDIQDDYSILDLPADMPRELLAHLKKVWVSGQQLNMRKLEDGEAAAAASKPRFPR
GGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagatctcggcctctcggacgctgtg
atgaaggccgttgccaatgtgggctacgagtcgccgtcgccgatccaggccgccaccatc
cccgcgctactggccggccgcgacgtgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctcaaccaggtcaagccgcaggca
ttggtactggccccgacccgcgagctggccatccaggtcgccgaggcgttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtctatggcggccagccctatgcccag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtcggtaccccgggccgggtgatc
gatcacctggaccgcggcactctggatctgtcccagctcaagacgctggtgttggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgatgtcgaagcggtgttgaagaaactg
ccggagcagcgccaggtggcgttgttctcggccaccatgccgccggccatccgccgcatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcgggctgcacaagctggatgcgttgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggcggcc
accgaagagctggcgcagaagctgcaggcgcgcggcatggcggcagcggccatcaacggc
gacatgcagcaggccgcacgcgagaagaccatcgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcacgcggtctggacgtggagcgcatcagccacgtg
ctgaactacgacattccctacgacaccgaaagctacgtgcaccgcatcggtcgcaccggc
cgtgccgggcgtaacggcgacgcgatcctgttcgtgacgccgcgcgagaagggcatgctg
cgctccatcgaacgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtcgcgcgcttcatgacccgcatcaccgagaccctggccggt
ggtcagatcgacatgtatcgcgatctgctgcagcgctacgaggccgaaaacaacgtgccg
gcgatcgatatcgctgccgcgctggccaagctgctgcagggcgatgccccgttcctgctg
accccgccggtgcgcggtgtgcgcgaagagtccgctccgcgccagcgcaacgagcgagcc
gaccggggcgagcgcccgcgtttcgaacccacgttcgaacgtggcccgcgtgccgacggc
gaacgcgctgcgcgtccgccgcgcggcgacgataccggcgagcgtccgcgccgcgagccg
gccccacgcggagagcccgagttcggcatggagagctaccgcatcgaagtgggccacagc
cacggcgtgaagccggccaacatcgttggcgcgatcgccaacgaagccgggctggaaagc
cgttatatcggtcgtatcgacatccaggacgattattcgatcctggatctgccggccgac
atgccgcgcgaactgctcgcccacctgaagaaggtctgggtgtccggtcagcagctcaac
atgcgcaagctggaagacggcgaagcggccgctgcggcgtccaagccgcgcttcccgcgt
ggcggcaagccgtccggtcgtccgaacggcccgggccgtccgatggaccgcgccggcgca
ccgcaccgcaagggtccgccaaagccgcgcggcgagtag
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