Xanthomonas citri subsp. citri Aw12879: XCAW_04589
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Entry
XCAW_04589 CDS
T02519
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCAW_04589 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xci03019
]
XCAW_04589 (srmB)
Enzymes [BR:
xci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCAW_04589 (srmB)
Messenger RNA biogenesis [BR:
xci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCAW_04589 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AGI10352
LinkDB
All DBs
Position
complement(5135253..5136968)
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AA seq
571 aa
AA seq
DB search
MSDKPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFRE
AREQRAAEEQRRGGGRGGPGGSRSGSGGGRRDGAGADGKPRPRRKPRVEGQAPAAAASTE
HPVVAAVAAQAPSAGVADAERAPRKRRRRRNGRPVEGAEPALASTPVPAPAAPRKPTQVV
AKPVRAAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgaccttttcctcgttcgacctgcatccggccttg
atcgccgggctggagagcgccgggtttacccgctgtaccccgatccaggcgctgaccttg
ccggtcgcgctgccgggcggcgatgtcgccggccaggcccagaccggtaccggcaagacc
ttggcatttctggtcgcggtgatgaatcggctgctgatccgcccggccctggccgaccgc
aagccggaagacccgcgcgcgctgatccttgcgccgacccgcgagctggcgatccagatc
cacaaggatgcggtcaagttcggcgcggacctgggcctgcgctttgcgctggtctacggc
ggggtggactacgacaagcagcgcgagctgttgcagcagggcgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtcaagcagcacaaggtggtctcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagacgttgttgttctcggcc
accctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggagaagctc
gttgtcgaaaccgaaagcatcaccgccgcgcgggtgcgccagcgcatctatttcccgtcc
gacgaagagaagcagacgctactgttgggcttgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggccttcgtggagcgcgtggcgcgcaccctggagcggcat
ggctaccgggtgggtgtgctgtcgggcgatgtgccgcagaagaagcgcgagtcgctgctc
aaccgcttccagaaaggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggt
ctgcatatcgacggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtccatcgcatcggccgcaccgcgcgtctgggcgaggaaggcgatgcgatcagcttc
gcctgcgaacgctatgcgatgagcctgcccgacatcgaggcctacatcgagcagaagatt
ccggtcgagccggtgacgtccgaactgctgacgccgctgccgcgcgcgccacgcgtgccg
gtggaaggcgaagaggccgacgacgacgctggcgacagtgtgggcacgatcttccgcgaa
gcgcgcgagcagcgtgccgccgaagaacagcgtcgcggtggtgggcgcggtggccccggc
gggtcgcgcagcggcagtggcggtggtcgccgcgatggcgcaggtgccgatggcaagccg
cgtccgcgtcgcaaaccacgggtggaaggccaagcgcctgcagctgcggcgtcgaccgaa
catccggtggttgctgcagtagcggcacaggcaccttccgcgggcgtggccgatgccgag
cgcgcaccacgcaagcgtcggcgtcgtcgtaacggtcgtccggtcgagggtgccgagccg
gcactggcatccacgccggttcccgcgcctgccgcaccgcgcaagcccacccaggtggtt
gccaagccggtgcgtgccgccgccaagccgtcgggtagcccgtcgctgctcagccggatc
ggccgccgactgcgttcgctggtctccggcaactga
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