Xanthomonas citri subsp. citri UI6: J158_02577
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Entry
J158_02577 CDS
T03894
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xcj
Xanthomonas citri subsp. citri UI6
Pathway
xcj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J158_02577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcj03400
]
J158_02577
Enzymes [BR:
xcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J158_02577
DNA repair and recombination proteins [BR:
xcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J158_02577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AJY86958
LinkDB
All DBs
Position
complement(2804024..2806642)
Genome browser
AA seq
872 aa
AA seq
DB search
MSLSEYRRKRSFDKTREPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAATPADDV
RRAGAGKTQRKGLTTVPPPAAKKRGTWAKQALALSGARRAEMEDAPFAPQLAKLVQSPPE
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRNAQIDGELI
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKQLLQQVLQAAPH
MHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPT
PDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGRSTSS
STQRSAKTRAAKNAATQVAKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVIEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYPLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDRIRQNLARWAEQDED
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgaataccgccgcaagcgcagcttcgacaagacccgcgagccggagccg
ggcaagaccctgccgccggggcagcgtgcgatcttcgtggtgcagttgcaccacgccagc
cgccgccactacgattttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagttacgaccccaaggtcaagcgcatggcagtggaggtggaagaccacccg
gtcgattacgccagcttcgagggcgagattcccaggggcgaatacggcggcgggcacgtg
gcgcagttcgatcatggcgtgtgggccaccgcaggcgaccccgaagcgcagttggccaag
gggcatctgcgcttcgagttgttcggcaacaagctcaagggcggctggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaagaggacgatgcctacgct
ggcacgctggaggccgacgacctactggccgacgtcgctgccacacctgccgacgatgta
cgccgcgcgggcgccggcaagacccagcgcaaggggctgacgaccgtaccgccgccagcg
gcgaaaaaacgtggcacctgggcgaaacaggcgctggcgctgagcggcgcacgtcgcgcc
gagatggaagatgccccgtttgcgccgcagctggccaagctggtgcagtccccgcccgaa
ggcgcgcagtggctgcatgaaatcaaatgggacggttatcgcatcctggccacggtgacc
aatggcaaggtgcggctgtggtcgcgcaatgcattggagtggaccgacaagacaccggaa
attgccgatgccatccagtcgctgggcctgcgcaatgcgcagatcgatggcgaattgatc
gccggacgcggcaccaaggaagacttcaacctgctgcaggccaccttgtccggcgaacgc
caggtgccgctggcgctggcggtattcgacctgctgcatgtggacggggtggacattagt
gaggcaccgttgcgcgagcgcaagcagctgttgcagcaggtgctgcaggctgcaccccac
atgcatctggcctatagctcgcatgtcgagggcgacggcaccgaggcgttccgggtggcc
ggcgaacagcacttcgaaggcatcatttccaaacgcgcagatcgcccgtatcgcgatggg
cgcagcgacgattggcgcaagaccaagcaactggccagccaggaatatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggttttggctcgctgttgctggccacgccggac
ccggtgcacggctggttatacgtgggccgtgtgggctcaggtttctccgatgccttgatg
cgcgaggtcacccagcaactggaaggcggtgggcgcaaacccaccgcgcatattcccacc
ccagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgcggcatcggtgggcaacagttattgcgccaggcatcgttcaaggcgctgcgtccg
gataaacgcattgccgatctggccgacagcgatgccggaaatggccggtctacttcgtcg
tctacccagcgttcggcaaaaacacgtgctgccaaaaacgcggcaacccaggtagcgaaa
cgtgcagcgacgcgggcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatccgcgcgacc
aagggcgatgtctgggactactaccaggcggtgatggatcacctgttgccgcagatcgtg
ggacgcccgctgtccatcattcgctgccccagcggcgccgaaaaaccgtgtttcttccag
aagcaccacaccgccggcctcgagcgtgtgagctcggtcaaactgaccgaagagaccggc
accaatgcgtattacctggtgatcgaagacgcacccggcctgctggagctggtgcaattc
aatgcgctggaattccatccctggggctcgcatgccgaccgcccggatgtggccgaccgg
gtggtcttcgatctcgacccgggcccggacgtgccgttcgccgaggtcaaacgtgcggcc
aacgatattcgtaagctgctggcgcaattggagctggagtcgttcctgcgtgtgtctggc
ggcaaggggctgcacgtggtggtgcccctgaatcccggctgcgactgggaggtgaccaag
cgtttcgccaagggattcgccgatgccctggcgcaggccgagccgcagcggttcatcgcc
actgccaccaagcggctgcgcaacaagcgcatcttcgtggactacctgcgcaacggccgt
ggcgccacggcggtcgcgtcctatccgttacgcggccgcccgggggcgccagtcgcgctg
ccgctggcgtggtcggacctgtccaagctgcagcgcgccgatgcattcaccttgcgcgat
gtgccggaaaagctgcgccgtcggcgcaaggacccctgggcagacatggaccgcattcgg
cagaacctggcgcgctgggcggagcaggacgaggactga
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