Xiphophorus couchianus (Monterrey platyfish): 114137605
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Entry
114137605 CDS
T05908
Name
(RefSeq) E3 ubiquitin-protein ligase parkin-like
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04120
Ubiquitin mediated proteolysis
xco04137
Mitophagy - animal
xco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
114137605
04120 Ubiquitin mediated proteolysis
114137605
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
114137605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114137605
04121 Ubiquitin system [BR:
xco04121
]
114137605
03029 Mitochondrial biogenesis [BR:
xco03029
]
114137605
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
114137605
Membrane trafficking [BR:
xco04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
114137605
Aggrephagy
Other aggrephagy associated proteins
114137605
Xenophagy
Other xenophagy associated proteins
114137605
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
114137605
Mitochondrial biogenesis [BR:
xco03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
114137605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
114137605
NCBI-ProteinID:
XP_027862115
LinkDB
All DBs
Position
22:complement(25853076..25857169)
Genome browser
AA seq
455 aa
AA seq
DB search
MIVFVRFNRGPGVAMELSAAARVAELKEIVASQQGVPAQELRVLFAGRELQSSASLQGCD
LPEQSTVHVVLPPPGSLHLPPPQEHLAASVTRLTRLDLSSSRLAAAAATVQTTVLEGGGG
DEDQRTEQQAAAPKGVCSTFFVYCKRCSSIQSGKLRVRCRRCRQMTLTLCRGPSCWDDVL
LPGRIHGVCQFEGCHGNEAEFYMKCASHPTSEDDVSVALDLVLSNTRSVPCIGCTDIRDV
VLVFQCSDRHVICLDCFQRYCQTRLNERQFIYDAVIGYSLPCAAGCENSLIRELHHFRIL
GDNQYGRYQQYGAEECLLTAGGVLCPSPGCGAGLLPPEGSRKVECDRRLLGCGFVFCRDC
REGFHEGPCEGPAAPPPADACQGFVVEDEASQRGRWDRASLQLIQESTRRCPRCLVPVER
NGGCMHMQCTQCRAEWCWLCGAPWNRECMGNHWFG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtgcggttcaaccgcggccccggcgttgccatggagctgagcgcggcg
gcccgcgtggcggagctgaaggagattgtggcgagccagcagggagttcctgcccaggag
ctccgggttctgttcgccggcagggagctgcagagttccgcctccctccagggctgtgac
ctcccagagcagagcacggtccatgtggtgcttcctcctccaggctccctccacctgccg
ccgccgcaggaacacctggctgccagcgtaacaaggctgacccggctggacctgagctcc
tccaggctggccgccgccgccgccacagtgcagaccaccgtcctggagggaggaggagga
gatgaagatcagaggacagagcaacaggctgcagctcctaaaggtgtgtgtagtaccttc
ttcgtgtactgtaagcgctgctcatccatccagtcagggaaactccgtgttcgctgtcgg
cgctgcagacagatgacgctgacgctttgcaggggtccttcctgctgggatgatgttctc
ctgcctggacggattcatggcgtctgtcagtttgaaggttgccacggcaatgaggcggag
ttctacatgaaatgtgcgtctcaccccacgtcagaggacgacgtctcggtggcgctggac
ctcgtcctgtccaacaccagaagcgttccctgcatcggctgcaccgacatcagggacgtg
gttctggtcttccagtgttcggaccgtcatgtgatctgcctggactgcttccagcgctac
tgccagacgcggctcaacgagcggcagtttatttatgacgctgtgattggatactcgttg
ccatgtgcagctggctgtgaaaactctctgatcagagagttacatcacttcaggatcctg
ggagacaatcagtacggccgctaccagcagtacggcgctgaggagtgtctgctgaccgcc
ggcggcgtgctgtgcccctcacctggctgtggggcggggcttctaccacctgagggcagc
aggaaggtggagtgtgaccggcggctgctgggctgtggcttcgtcttctgcagggactgc
agggagggcttccatgaggggccgtgcgagggccctgcggccccgcccccagcggacgcc
tgccagggcttcgtggtggaggacgaggcgtctcagagagggaggtgggaccgggcgtct
ctgcagctcatccaggagtcgacccggcgctgcccgcgctgcctggtacctgtggagagg
aacggcggctgcatgcacatgcagtgtacccaatgccgagcggagtggtgctggctctgc
ggcgccccctggaacagggagtgcatggggaaccactggtttggatag
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