Xiphophorus couchianus (Monterrey platyfish): 114138457
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Entry
114138457 CDS
T05908
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114138457 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114138457 (herc4)
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
114138457 (herc4)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
HECT type E3
114138457 (herc4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
114138457
NCBI-ProteinID:
XP_027863538
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All DBs
Position
22:complement(23772782..23785722)
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AA seq
1047 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRRCDFFHGKRVNDVGCGRKHTAFLLDDGTVYTCGC
NDLGQLGHDKSRKKPEQVVALDAQIIVALSCGESHTLALNDKGQVFSWGLGSDGQLGLNN
FEECIRVPRNIKSLSDVQVAHVACGYWHSLALSRGGQIFSWGQNRYGQLGLALTGQSFST
PQAVQSLQAVPFVQLAAGGAHSFALTVSGAVFGWGRNKFGQLGVNDSNDRCFPTLLKSLR
SQRVIYVCCGEDHTAVLTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIS
CGRQHTLAFTPACGKIYSFGLGGNGQLGTRATCNRKSPSPVKGPWATSCPSEENDLEQSC
LVKRIYAGGDQSFAHYCSINEPQDMDNLTEQDPQRRICTLNEAIVQKWLNNSPGRLPVDV
SNEIDLVFSSASCLNGSFLSTSHPGHFSTSSKYSGVDMNMARLLLHRLIQQDHPKISQQV
AASLEKELIPKLSSSPPDIEALRLYLFLPESPLFSDRSNYITITIPFAKCIVGLKETPLK
VLGNWWSTFEPLFFQRLVDLYKDVIVFLLQMHKMGIPPAEQRIFTCFVDTSLRFLEILHK
VNEKSGSIIQYDKFYIHELDDLIDIRNDYVTWIQRQMYPMGRDGVVTLCKYPFVFDAQAK
TALLQTDAVIQMQMAVDQAQLQNFSSMFLPAVESVNPCLILIVRRENIVGDTMEVLRKSK
NVDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSHKTFE
DFDLFNLIGVICGLAIYNFTIVELNFPLALYKKLLKRKPTLEDLRELMPDVGRSLQELLD
YAEDDIEDAFCLNFTITEDNYGATEVLELVPNGENINVNKSNRQEFVDAYVDYVFNKSVA
SLFEGFYSGFHKVCGGRVLDLFQPSELQAMIIGNTNYDWTELEKSTEYKGEYWAEHPTIK
LFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQPTGGGEHYLPVAHTCFNLLD
LPKYSSIETLREKLLHAIDHNQGFNLA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgttggggaaacgcctcctacggacagctcggcctgggcgggatcgacgaagag
attgtagttgagccgcggaggtgtgacttttttcacgggaagcgagtgaacgacgttggc
tgcggccgcaaacacacggccttcctgctggacgatgggaccgtctacacctgcggctgc
aacgacctgggccagctgggtcacgacaagtccaggaagaaaccagagcaggtcgtggcc
ttggacgcacagattatcgtggcgttgtcctgcggagagtcgcacacgctggccttaaac
gacaaaggccaggttttctcctgggggctcggctcagacggacaactgggtctaaataac
tttgaagaatgtattcgagttccgaggaatatcaagagtttatcagatgtacaggtcgcc
cacgtggcctgtgggtactggcactccctcgctctctccagaggcggccagatcttctcc
tggggtcagaaccgatacggccagctggggctggccctgacgggtcagagcttctccacg
cctcaggccgtccagtcgctgcaggctgttcccttcgttcagctggcagcaggtggcgct
cacagcttcgccctcactgtctctggagccgtgttcggctggggccgcaacaagttcggc
cagctgggggtcaacgacagcaacgatcgctgcttcccaactctcctcaagtccctgaga
tcccagagagtgatctatgtctgctgtggagaagatcacacggccgtgctcacaaaggaa
gggggtgtgtttacgtttggagcaggcgggtacggacagctcggccataactccaccaac
catgaaatcaaccccaggaaggtgtttgagctcatgggaaatgtagtcactcagatttca
tgtggaaggcagcacacgctggctttcacacctgcttgtgggaagatttactcgtttgga
ctgggagggaacggccagctgggcacacgcgccacctgcaacaggaagagcccctccccc
gttaaaggaccctgggccacttcctgcccatcagaggagaacgacttggagcagagctgc
ttggtcaaaaggatttatgctggaggagatcagagctttgctcattattgcagcattaat
gaacctcaggacatggacaatttgacagaacaagatcctcaaagaaggatttgcaccctg
aatgaggcgatcgtacagaaatggctgaacaactcaccaggaagactcccggtcgacgtg
tccaatgagatcgacctggtgttctcctctgccagctgcctgaacggctcgtttctgtcc
accagtcacccgggtcacttcagtaccagcagtaaatattctggagtggatatgaacatg
gctcggctgcttctccacagactgatccagcaggaccacccaaagatttctcagcaggtt
gctgccagcctggagaaggagctgattcccaaactgagcagctctcctccagacatcgag
gcgttgaggctctacctgtttctgcctgaaagccctttgttcagcgaccgcagcaactac
atcaccatcaccatcccctttgccaaatgcatcgtcggcctcaaggagacgccgctgaag
gttttagggaactggtggtccacattcgagccgctgttcttccagcggctggtcgacctc
tacaaggacgtcattgtgtttctgctccagatgcacaaaatgggcattcctccggccgag
cagcggatcttcacctgcttcgtggacacttcgctccggttcctggagattctgcacaag
gtgaacgagaaatcaggaagcatcatccagtacgacaagttctacatccacgagctggac
gacctgatcgacatcaggaacgactacgtcacctggattcagaggcagatgtaccccatg
ggccgcgacggtgtggtgactctctgcaagtatcccttcgtcttcgatgctcaggcgaag
acggcgctgcttcagacagacgccgtcatacagatgcagatggcggtggatcaggcgcag
ctgcagaacttcagctccatgttcctgcccgctgtggagtcggtcaacccctgcctcatc
ctcatcgttcgcagggagaacatcgtgggcgacaccatggaggtcctcaggaagtccaag
aacgtcgactacaagaaaccactgaaggtgatctttgtgggagaagatgcagttgatgct
ggaggagtcaggaaagagtttttcctcctgatcatgaaggagctgctggatcccaaatat
gggatgtttcgctactacgaggaatccagactcatctggttttcacacaagacgttcgag
gactttgacctgtttaacctcatcggggtcatctgtggtctggccatctacaacttcacc
atcgtagagctcaacttccctctggcgctctacaaaaagctcctgaagaggaaaccaacg
ttggaagacctgagggagctcatgccagacgtgggaaggagcctgcaggaactactggac
tacgctgaagatgacattgaagatgctttctgtttgaatttcactatcacagaggataac
tacggagccactgaggtcctggagttggtaccaaacggtgaaaatattaatgtcaataag
tcaaaccggcaggagtttgtggacgcctatgtggattacgtctttaacaagtcagtggct
tcgctgtttgagggattctactcaggtttccacaaagtgtgcggtgggagggtcttagat
ctgttccagccgagcgaactgcaagctatgatcattggcaacaccaactatgactggaca
gagctggagaagagcactgaatataaaggagaatactgggccgaacatccaaccataaag
ctcttctgggaggtcttccacgaacttccattggagaagaagaaacagtttctattgttc
ctcacaggaagcgaccgcatccccatcctgggcatgaaaagcctgaagctggtgatccag
ccgaccggcggaggggagcattacctgcctgtagcccacacctgcttcaacctgttggac
cttcccaagtactcgagtatagaaacgctgagagagaagcttttacatgcgatagatcac
aatcaaggcttcaacctggcctga
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