Xiphophorus couchianus (Monterrey platyfish): 114141156
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Entry
114141156 CDS
T05908
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114141156 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114141156 (lig4)
Enzymes [BR:
xco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114141156 (lig4)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114141156 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
114141156
NCBI-ProteinID:
XP_027867426
LinkDB
All DBs
Position
24:complement(15693634..15698751)
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AA seq
909 aa
AA seq
DB search
MMEGTSKNGAAAAEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHAAL
HKDNLKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYR
APTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLH
LITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLKKVCQQLHDPSV
SLSEVSIELFSAFKPMLAVVANIRNIEKQMGNSPFYLQTKLDGERIQLHKDGDVYKYFSR
NAFEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAFNPTAETFMQKGSKFDIKR
LMDDSELQTCFCVFDVLLVNNQKLGKEPLKKRYEFLQTVFTPVKGRIHVVPKTEVGTMQD
VVSALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGK
GRRGGMMSHFLCAIAEAAKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKND
PPASILCGVEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQC
MTLAELDQFRSKASGKLASRHLHIDGDEPQKKKRKLPVKPKKVVGVIDHFKPQDLSGVSK
EMDMFEDVEFCILNGTEGHPKSELEKGVARCGGIVVQNPGRDTYCVVAGVENMRVKNLIS
SNQHDVVWASWLLECLDQKEVVPWQPHHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQL
REVFSRIDREQAATASVSAAQVEERYGWDDLPTSMFRPFTFYFHILDPKSATGATCLDIR
ALEVRYHGGTVAKALEEGVSHVVVEEETRLLELRTLRRRFRKKFKIVRDSWVTDSITAGH
LMDDADYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgatggagggaacttccaaaaatggagcggctgctgcagagcccagcgttgctgctcag
gttcctttccttcacttgtgcacaactttagagaaaatccagaagtccaaactccgtcca
gataaatccaagatccttggggatttcattgaatcatggcggaaatttcatgccgccctc
cacaaggacaatctgaaaactacagactccttctatcctgctatgcgcctcatcgtcccg
ccttttgagcgagagcgaatggcctatggcatcaaagagagcatgctagctaagctctac
attgatgttttaggcctcccaaagaatggcccagaagccagtaagctcctgaactaccgt
gctccgactacatcccaaggagaagcaggggatttcgccggcatggcatactttgtgctg
aagaagcgatgtaccagccaaggaaacctcagtatcaaagaggtcaatgactttcttgac
tcagtggccatcaacaatgccagcaagcagaaggatcaggtgaaaaagagcctgctgcac
ctcatcactcagagctctgctctggagcaaaagtggcttattaggatgattctgaaggac
atgaagcttggagtcagcaaggaaactgttctccaggtcttccacccggacgctgcagag
ctctacaatgtcaacacagacttaaagaaggtgtgccagcagctgcacgacccctctgtg
tctttaagcgaagtctcgattgaactcttctctgccttcaagccaatgttggcagtggtg
gccaacatccgcaacatcgagaagcagatggggaacagccccttttaccttcagacgaaa
ctggatggggagcggattcagcttcacaaggatggagacgtgtacaagtacttcagccgg
aatgcatttgaatacacgcagcagttcggaggatcgccgctcgagggatctctcactcct
tacatccacaacgtgttcaaaagcaacgttgtaaactgcatcttggatggcgaaatgatg
gcattcaacccgacggcggagaccttcatgcagaaagggagcaaatttgacattaagaga
ctgatggacgactctgagctgcagacgtgcttctgcgtctttgacgtgttgctggttaat
aaccaaaaacttggcaaagaaccgctgaagaagcgatatgagtttctccagacggtcttc
acccccgtcaagggtcggatacatgtggtgccaaagacagaagtcggaacaatgcaagat
gttgtcagtgctcttaacgatgccattgacaacagggaagaagggattatggtgaaggac
cctttgtccatctacaaacctgataaacgaggggagggttggctgaaaataaagccggag
tatgtggacggcttgatggatgagctggacctgctgattgttggtggttactgggggaaa
ggaagacggggcgggatgatgtcccactttctatgtgctattgcagaagcggcaaagcct
ggtgagaagccgtcggttttccactccttctgccgaattggctcaggttacaccatgaaa
gagttgtatgaccttgggttgaagcttgcgaagcattggaaagtctaccggaaaaacgac
ccgccggcatccatcctctgtggagtggagaaaccggaagtgtacatcgaaccctgcaac
tcagtcatcatccaggtcaaagcggccgagatagtcggaagtgacatgtacaagaccaac
tgcaccctgcggttccccagaatcgaaaagatccgcgaggacaaagagtggcaccagtgc
atgactctggcagagctggatcagttccgcagcaaggcgtccgggaaactggcctcgcgg
caccttcacatcgacggcgatgaaccacagaagaagaagcggaagctgcctgtcaaacca
aagaaggtggttggcgtcattgaccacttcaagccccaggatctgtccggagtttccaag
gagatggacatgtttgaggatgtggagttctgcatcctgaacggcactgaaggtcaccca
aagtcagagctggagaagggtgtggccaggtgtggcggcattgtggtccagaacccggga
cgggacacttactgcgtggttgccggcgtggagaacatgcgcgtgaagaacctgatttcc
tccaatcagcacgacgtggtctgggcatcatggctgctggagtgcctggatcagaaggaa
gtggtgccatggcaaccgcaccacatgatccacatgtcgccctcgaccagggaacacttc
gccaaggagtacgacagctacggcgacagctactttgtcgatacggacgagcagcagctg
agggaagtgttcagcaggatcgacagggagcaggcggcgacggcgtctgtcagcgcggcg
caggtggaggagcgttacggctgggacgaccttcccaccagcatgttcagacccttcacc
ttttacttccacatcttggatccgaaaagcgcaacaggtgctacctgtctggacatcagg
gcgctggaggttcgataccacggagggacggtggcgaaggcgctggaggaaggagtttct
cacgtcgttgtcgaggaagagacgagactcctggagctgaggacgctgaggcgccgcttc
aggaagaagtttaagatcgttagagactcgtgggtgaccgactccattacggcagggcat
ctgatggacgatgctgactacctggtttga
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