Xiphophorus couchianus (Monterrey platyfish): 114142859
Help
Entry
114142859 CDS
T05908
Symbol
usp47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xco01002
]
114142859 (usp47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114142859 (usp47)
Enzymes [BR:
xco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
114142859 (usp47)
Peptidases and inhibitors [BR:
xco01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
114142859 (usp47)
Ubiquitin system [BR:
xco04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
114142859 (usp47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
114142859
NCBI-ProteinID:
XP_027870176
LinkDB
All DBs
Position
4:17697040..17717420
Genome browser
AA seq
1355 aa
AA seq
DB search
MEMVPSEENQFVPKEIHNAAEEPRVLCIIQDTTRARTVNERLTLNLPASTTLSKLYEDVA
HKAGYVNGSFDLTWGNTQNMAPLEHNSEMSLSDSSFEPDGKKNFLQLTDKDGEQPQIASD
ESGTADSSGLDDSSQERFIGPLQRDGSAGGSGDYSPSYSYSSILSKSETGYVGLVNQAMT
CYLNSLLQTLFMTPEFRNALYNWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDV
TRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGKLKDYVRCLECGY
ESWRIDTYLDIPLVIRPFGASQAYGSVEEALQAFIQPETLDGPNQYFCERCKKKCDARKG
LRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSPFIDVEDEKSPQTESCTD
SGAENEGSCHSDQMSNDFSTDDCVDEGICLDSTSSTERALKPKSLLTFELFSVMVHSGSA
AGGHYYAYIKSFSDGQWYSFNDQHVSKITQDDIRKTYGGSSGSRGYYSSAFASSTNAYML
IYRLKDPSRNSRFLAVEDFPEHIKSLVQKEKESEEQEKRQREIERNTCKIKLFCVHPLKM
MMESKLEVHKDKTLKEATEMAYKLMELEGVVTLDCCRLVKYDEFHEYLERSYEGEEDTPM
GLLLGGVKSSYMFDLLLETRRSDQVFQPYKPGEVMVKVHVVDLKTETIALPISVRAYLNQ
SITEFKQLIAQATGLSAETMRVVLERCYNDLRLLNVPNKTLKAEGFFRSNKVFVESSLLT
DHQVPFTDSLLWKLLDRHGNTIRLLVLLPEQSPGTLASRTLCQKAGEDSDGPFEGLKGNR
KSVEAILEESTEKLKNLSLQLQQGSSASDSQKSSDTSDFEHIESPTQEADSNSSLCVAAD
SRELENRISGSSDTENQFVCEERSDSEVNNDRSTSSVDSDILSSSHSSDTLCNADSGPIQ
LANGLDSHSITSSRRSKAHEGKKETWDTAEEDSGTDSEYDDNGKSKAEAQYLYFRAEPYS
QDDASWDTHKCLVVHVDKRITLAAFKQNLEPYVGVPSSQFKVFRVYANNQEFESVRLNET
LSSFSDDNKITIRLGRALKKGEYRVKVFQLLVNEPEPCKFLVDTVFAKGMTVRQSKEELL
PQLKEQCKLDLSIDRVRLRKKTWKNPGTVFLDYHVYEEDISISSNWEVFLEVLDDSEKMK
SMSQLAILTRKWNPATMKLGPFQEAILESSSVEELKEKLSEMSDIPLENLEFAKGRGTFP
CDISVLEIHQDLDWNPKVSTLNVWPLYICDDGAVVFYRDSRDEPLELSEDERNELMKKES
SRLLKTGHRVSYSPRKEKALKIYLDGGPVRDPGQD
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggtgcccagcgaggagaaccagttcgtacccaaagagatacataatgcagct
gaggagcccagagtgctgtgcataattcaggacacgaccagggcgaggacggtcaacgag
aggctgaccctcaacctgcccgcttccaccactctctccaaactttacgaggacgttgcc
cataaagccggatatgtgaatggctcttttgacctcacctgggggaatactcagaacatg
gcaccgctggagcataacagtgagatgtcgctctctgattctagctttgagcctgatggt
aagaagaattttctccagcttacagataaagatggagagcaaccacagattgcatcggat
gagtcaggaacagcagatagcagtgggctggatgacagttcccaggagcggtttatcggc
cccctgcaaagagacggcagcgcgggcggcagcggtgactacagtccatcgtactcctac
tcatccatcctcagcaaatctgagacaggttatgttggtttggttaaccaagcaatgacc
tgctatttgaacagtcttctccaaacactgtttatgactcctgagttcagaaatgcactc
tacaattgggagtttgaggaatctgaagaggatcccgtcaccagtatcccctaccagctg
caaaggctctttgttctgcttcagaccagtaagaaacgggcgattgagacaactgatgta
actaggagcttcgggtgggatagcagtgaggcctggcagcagcatgacgtccaggagctg
tgcagggtcatgttcgatgccctggagcagaagtggaagcagacagaacaggctgatctg
atcaaccagctgtaccagggaaagctgaaggattatgtgcgttgtttagagtgtggatat
gaaagctggagaatcgacacttacctggacatccctcttgtgatcagaccctttggagcc
agtcaggcctacggaagtgtggaagaagctttgcaggcattcatccagccagaaaccttg
gacggccccaaccagtacttttgtgagcgctgcaaaaagaaatgtgatgcccgaaagggt
ttgaggtttctccacttcccctacctgctgacgctgcagctgaaaaggtttgattttgac
tacaccactatgcatcgcatcaagcttaacgaccgcatgactttccccgaggagctcgat
atgagcccgttcatcgatgtggaagacgagaagtcgcctcagacagagagctgcactgat
agcggagcagagaatgaaggcagttgccacagtgaccaaatgagcaatgatttttccact
gatgactgtgtggatgagggcatctgcttggacagcaccagtagtacagaaagggcattg
aagccaaagagcttgctgacctttgagttgttctccgtcatggtccattcgggcagcgct
gcgggcggacactactacgcctacatcaagtccttcagtgatggccagtggtacagtttc
aatgatcagcatgttagcaagatcacccaggatgatatcaggaagacatatggggggtcc
tcagggagcagaggctattattccagtgcctttgcaagttccacaaacgcttacatgctg
atttatagattgaaagacccctcaaggaattcaaggtttttagctgtggaagatttccca
gagcacataaagagtttggttcagaaggagaaggaatccgaagagcaagagaagcgccag
agagaaatcgaacgaaacacttgcaagatcaagctcttctgtgtgcatcccctcaaaatg
atgatggagagcaagttggaggttcataaagataaaactctcaaagaagcaacagaaatg
gcctacaagctgatggagctggaaggagttgtgactctggattgctgtcgcttggtaaag
tatgatgagttccatgagtatctggagcggtcgtacgaaggcgaggaagacacccctatg
gggctcctgcttggaggcgtcaagtcctcatacatgttcgatttgctccttgagactcgc
cggtctgatcaggtcttccagccttataaacctggagaggtgatggtgaaggtccatgtt
gttgatctgaagactgagaccatcgcccttccaatcagcgtgcgagcgtacctgaaccag
tctatcactgaattcaagcagcttatagcgcaggctacaggtctgtctgcagaaacgatg
cgtgtggtcttggagcgatgctataacgacctcaggctgctcaacgtcccaaacaagacg
ctaaaagccgagggtttcttcaggagcaacaaggtttttgtggagagctccctgttgact
gatcatcaggttccttttaccgactcgctcttgtggaaactgttggatcgccacgggaac
acgatccgcctgcttgtcttgctgcctgaacaatctcctggcaccctggccagcagaact
ctttgtcaaaaagcaggagaagactctgacggtcccttcgaagggttgaagggcaacagg
aaatctgtggaagcgatactggaggagagcacggagaaattaaagaacctgtctctgcag
ctgcagcagggctccagcgccagcgacagccagaaaagttccgacaccagcgactttgaa
cacatcgagtcgccgacgcaggaggcggactcgaactcttcgctgtgcgtggcggcagac
agcagggagctggagaaccggatatccgggtcctccgacacggagaaccagtttgtttgc
gaggagcgttcagactctgaggtgaacaatgaccgtagcacaagctcggtggacagcgac
atcctgagctccagtcacagcagcgacacgctgtgcaatgcggacagcggccccatccag
ctggccaatggcctggattcacacagtatcaccagcagccgacgctccaaagcccatgag
ggcaaaaaggagacctgggatactgctgaggaagactctgggacagacagcgagtatgac
gacaacgggaagagcaaggcagaagctcagtacctgtacttcagagcagagccttactcc
caggatgacgcttcatgggatacacacaaatgtttagtggttcacgtggacaagagaata
actttggcagcattcaagcagaacctggagccctacgttggagtcccgtcgtcccagttc
aaggtgtttcgagtttacgccaacaaccaggagtttgagagcgtacggctcaacgaaacg
ctctcatcgttctccgacgacaacaagataaccattcgactgggaagagcattaaaaaag
ggtgaatacagagtcaaagtgtttcagctgctcgtgaatgaaccagagccttgtaagttt
ttagtggacacggtctttgctaagggcatgactgtaagacagtccaaagaggagctgctt
cctcagttgaaagagcagtgcaagctcgacctcagcatcgacagggttcgtctcaggaaa
aagacgtggaagaatccaggaacggtgtttttggattaccacgtttacgaggaagacatc
agcatttcctcaaactgggaggttttcctggaagtcttggatgactcggagaagatgaag
tccatgtcgcagctggccattttgacccggaagtggaacccagctactatgaagctggga
cctttccaggaagcgattctggagagcagcagtgtggaagaactaaaggaaaagctcagt
gaaatgagtgatattcccctggagaacttggaatttgcaaagggcagaggaacgtttcca
tgtgatatatccgtgttggaaatccatcaggatttggactggaacccaaaagtttcgact
ctgaatgtgtggcctctgtacatctgtgacgacggagccgtggtcttctacagggacagc
agagacgaacctctggagctgtcggaggacgagcgcaacgagctgatgaagaaggaaagc
agccgcctgctgaagacgggacaccgcgtcagctactcgccacgcaaagagaaggccctc
aagatctacctggacggcggccccgtgagggacccggggcaggactga
DBGET
integrated database retrieval system
