Xiphophorus couchianus (Monterrey platyfish): 114145805
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Entry
114145805 CDS
T05908
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030
DNA replication
xco03410
Base excision repair
xco03420
Nucleotide excision repair
xco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114145805 (lig1)
03410 Base excision repair
114145805 (lig1)
03420 Nucleotide excision repair
114145805 (lig1)
03430 Mismatch repair
114145805 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114145805 (lig1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114145805 (lig1)
Enzymes [BR:
xco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114145805 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
114145805 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
114145805 (lig1)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
114145805 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
114145805 (lig1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
114145805 (lig1)
NER (nucleotide excision repair)
Other NER factors
114145805 (lig1)
MMR (mismatch excision repair)
Other MMR factors
114145805 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
114145805
NCBI-ProteinID:
XP_027875224
LinkDB
All DBs
Position
6:complement(24609339..24682357)
Genome browser
AA seq
1012 aa
AA seq
DB search
MQRSIASFFQPRSKAKDSQKKTADEPVKKPIKSPLKVQNGVQEADSPIKKVAKRSRQIVD
SDEDEVPLVKEQGDKGAPAKTEKTDDVFKAVLTPLSPTPAPSTPVTLETPETSASSTSAS
STSASSTSSGTPSTPSSTSTSRIMKRKTARKMFPKRKLDESESRKGEFEVAEEQGQQNKR
PRLESSVSSAENTDEPMEEGAKEEKVEKPVAQANSPDEEVGNEKTEGEKAKKEEEQVEEK
ISDEKEKKAEGAEKKNEAKKKTDDEKGPSVAKDKVAEKDTKDTGSPKSQMEEKKQKEAKE
QKDKEPAKKTPISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSEEEQKDAKGESTSGET
NYDPSRPNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSP
DDLLCCVYLCLNQLGPAYLGMELGIGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAE
SSRSNQRTMFQPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVR
SLAGKLRIGLAEQSVLSALSQAVCLTPSGQGFPPAVIDAGKGMSAESRRAWIEEKSLILK
QTYCEMPNYDIIIPVLLKAGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFT
CEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRVPKVKKDSVVSCVLDTEAVA
WDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRE
SFTEVEGEFLFARSIDSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLK
LKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDED
LEQHYKFLKEHTLAKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDA
EKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatcgttttttcagcccaggagcaaggctaaagacagccagaag
aaaactgcagatgaaccagtgaaaaagcccataaagagccccttgaaggtgcagaacggc
gtccaggaagcggattcgccgatcaagaaggtcgccaagcgcagccggcaaatcgtggac
agcgatgaagacgaggtgccgcttgtaaaagaacaaggcgacaaaggtgctcccgctaaa
accgagaagacggatgatgtgttcaaagccgtactcaccccgttgtctccaacgccggcc
ccatccacacccgtaaccctggaaacaccggagacgtcggcctcctcaacgtcggcctcc
tcaacgtcggcttcctcaacgtcttcagggacgcccagtactcccagttccacctccacg
tctagaattatgaaacgcaaaactgcgaggaagatgttccccaagaggaagctggatgag
agcgagagtcggaaaggggagtttgaggtcgcggaggagcagggtcagcaaaacaaacga
ccccgcttggagagcagtgtcagcagtgcagagaacaccgatgaacccatggaggaggga
gcaaaggaagaaaaggttgaaaagccagtggctcaggctaacagcccagacgaggaggtg
gggaacgagaaaacagaaggagagaaggccaagaaggaggaggagcaggtagaagaaaag
atctctgatgagaaagaaaagaaagctgagggggcggaaaagaaaaatgaagcaaagaag
aagacggatgatgagaaagggccttctgtcgccaaagacaaggtggctgaaaaggacacg
aaagacacagggagcccaaaaagtcaaatggaagaaaaaaagcagaaagaggcgaaggag
cagaaagataaggagccagccaagaaaaccccaatcagcagtttctttgctcccaggaaa
gcagcagttaagacagagaaaccagagaagaacgaaggagagaaaaagacgagtgctgag
aggaagagctccgaggaggaacagaaagacgcaaaaggtgaatcaacctcaggagagacg
aactacgatccttccagaccaaactaccatccggtggaccacgcctgctggaaacaaggc
caaaaagtgccgtacttggcagtggctcgcacctttgagaaaattgaagaggactctggc
aggctgagaaacatcgagacgctgtcgaacctgctccgctcggtgctgctgctctctcca
gacgacctgctgtgctgtgtgtacttgtgtctgaaccagctcggccccgcctaccttggg
atggagctcggcatcggggagacggtgctgatgaaagccgtcgctcaagcaaccgggcga
catttggacaaaattaaagcggaggcgcaggagaaaggagatttgggcctcgtggccgag
agttcccgtagcaaccagcgcaccatgttccagccggccagtctgacagcaggaggcgtg
tttaagaaattgaaggaaattgccagcatgagtgggaactcggccatgaataagaaaatc
gacatcatcaaaggcctctttgtggcgtgccgcttctccgaagcccgctacatagtcagg
tccctggctgggaagctgaggattggcctcgctgagcagagtgtcctctccgccctgagc
caggccgtctgcttgaccccgtctggacaaggtttccctcctgctgtgattgatgcaggg
aagggcatgagcgctgagagcaggcgagcctggatcgaagagaagagcctcattctgaaa
caaacatactgcgaaatgccaaattatgacatcatcatcccagttttactgaaagcaggc
atcgaccagctgcctaaacactgcaaactcactccaggagtcccgctgaggcccatgttg
gctcaccccaccaagggtgtcggcgaggtgatgaagaggtttgacgaggcagcgttcacc
tgcgagtacaaatatgacggagagcgtgcacagattcacattctggaaagcggtgaagtt
cggattttcagccgcaaccaggaagacaacaccagcaaatacccagatatcatctcgcgt
gtccccaaggtaaagaaggactctgtagtgtcttgtgttctggacacggaggcggtggcc
tgggatcgagagaagaaacagatccaacccttccaagtcctcaccactcgtaagagaaag
gatgtggacgcctcagagatcaaagtccaagtgtgcgtgtacgcctttgacctcctctat
ctcaacggagagtccctggtgcgacagccgctgtgtcggcgtcgggagctgctgagagag
agcttcacagaggtggagggagagtttctgttcgcccgttccatcgattctcacgacact
gacgccatcgcggagttcctggagcagtccgtccgagactcctgcgagggcctgatggtg
aagactctggagaaggacgcgacctatgagattgctaagcgttctcacaattggctcaag
ttaaagaaggactacctggacggtgtgggcgacacagtggacctctgcgtgatcggtgcc
taccttggaaagggaaaaagaacaggcacatacggtggcttcctgctggcctgctatgat
gaagacaatgaggagtttcagtcagtctgcaagatcgggacaggctttaaggatgaagat
ctggagcagcattacaagtttttaaaggagcacaccctggccaagccgcgcccatactac
cgcgtggaccaatcagccgagcccgacgtgtggctggacgctgtgcaggtttgggaggtg
aagtgcgccgacctctcgctgtcgcccgtctacaaggctgccatgggaatggtggatgca
gagaaaggcatttctctgcggttccctcgtttccttcgcatcagagacgacaagaagccc
gaggacgccaccaccggagctcagatcgctgatttgtacaagaagcagcaacagattcag
aatcaaggggagaaagctgacccggaggactactactga
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