Xiphophorus couchianus (Monterrey platyfish): 114145886
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Entry
114145886 CDS
T05908
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114145886
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114145886
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
SPRY
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_6
zf-RING_5
U-box
Fib_alpha
Nup88
Exonuc_VII_L
BshC
Motif
Other DBs
NCBI-GeneID:
114145886
NCBI-ProteinID:
XP_027875340
LinkDB
All DBs
Position
6:25603004..25605174
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AA seq
578 aa
AA seq
DB search
MRVQTCFCFQEIKLIQSLRLRAEMEQQAVQLDRETFFCSICLDLLKDPVAIACGHNYCMN
CIKTHWDEEDEKGIHSCPQCRETFIPRPVLNKNTMLAALVEQMKKTGLQAAPADHRYAGP
EDVGCDFCTGRKLKAIKSCLVCLASYCEKHLQPHYDLAPLKKHKLVEPSKNLQENICSKH
DKVTDIFCRTDQKCICYLCSVDEHKGHDTVSAAAEIAERQRELEERRGNIQQRIQDREKD
VKLLQQEVEAINHSADKAVEDSETIITKLIRLLRKRRSDVKQQIRSQQETEVSRVKDVQE
KLEQEITELKRKDAELEQLSHTEDHNQFLLNYPSLPALSESTHSSSINIRPLRHFEDVAA
AVSELREKLQDVLRDSWTNISLMVTKVDVLLSEPEPKSRAGFLKYSCEITLDPNTAQTQL
ALSEGNRKVRLMGQSQSYPRHPDRFTHYYQVLSRESLTGRCYWEVEWSGGPTIIGVAYKN
ISRVGIGKECLIGDNGKSWALNCHDSKFGHNNIWTSISGPVFSRVGVYLDHRAGILSFYS
VSDTMTLIHRIQTTFTEPLLAGLYIYKTGCSAEFCKPN
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgagagttcaaacatgtttctgttttcaggaaataaaactcatacagtctttgagactg
agagcagaaatggagcagcaggcagttcagttggatagagaaacttttttctgttcgatc
tgtctggatctactgaaggatccggtggctattgcctgtggacacaactactgtatgaac
tgtatcaaaacccactgggatgaagaggatgagaaaggaatccacagttgtccacagtgc
agggagacattcataccgaggcctgtactaaacaagaacaccatgctagcagctttagtg
gagcagatgaagaagactggactccaagcagctcctgctgatcaccgctatgctggacct
gaagatgtaggatgtgatttctgtactggaagaaaactgaaagccatcaagtcctgttta
gtctgtctggcctcttactgcgagaaacaccttcagcctcattatgatcttgctccttta
aagaaacacaagctggtggagccgtccaagaacctccaggagaacatctgctctaagcat
gataaagtgactgatatcttctgccgcactgatcagaagtgtatctgttatctctgctct
gtggatgaacataaaggccatgacacagtgtcagctgcagcagaaatagctgagaggcag
agagagctggaggagagacgaggaaacatccagcagagaatccaggacagagagaaagat
gtgaagctgcttcaacaggaggtggaggccatcaatcactctgctgataaagcagtggag
gacagtgaaaccatcatcaccaagctgatccgtctcctccggaaaagaagatctgatgtg
aagcagcagatcagatcccagcaggaaactgaagtgagtcgagtcaaagatgttcaggag
aagctggagcaggagatcactgagctgaagaggaaagacgctgagctggagcagctctca
cacacagaggatcacaaccagtttctcctcaactacccctcactgccagcactcagtgag
tctacacactcatccagcatcaacatccgtcctctgagacactttgaggacgtggcagca
gctgtgtcagagctcagagagaaactacaggacgtcctgagagactcatggacaaacatc
tcactgatggtcactaaggtggatgttctactgtcagaaccagaaccaaagagcagagct
ggattcttaaaatattcttgtgaaatcactttggatccaaacacagcacaaacacagctg
gcactatcagaggggaacaggaaggtgagactgatgggtcaatctcagtcttatcctaga
catccagacagattcactcattactatcaggttctgagtagagagagtctgactggacgt
tgttactgggaggtggagtggagtggaggaccaactatcataggagtcgcatacaagaat
atcagcagagtaggaataggaaaggaatgtttaattggagataatggcaaatcgtgggca
ttaaattgtcatgattctaaatttggtcacaacaacatctggacctccatctcaggtcca
gttttctccagagtcggagtgtacctggatcacagagcaggtattctgtccttctacagc
gtctctgacaccatgactctgatccacagaatccagaccacattcactgaaccgctgctg
gctggactttatatttataaaactggatgttctgcagagttctgtaaacccaactag
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