Xiphophorus couchianus (Monterrey platyfish): 114145959
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Entry
114145959 CDS
T05908
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114145959
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114145959
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
zf-RING_10
zf-RING_2
zf-RING_5
zf-RING_6
Gp58
MRP-S31
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
114145959
NCBI-ProteinID:
XP_027875456
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Position
6:26080794..26082777
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AA seq
561 aa
AA seq
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MAQQENQPDRLKFSCSICLDLLKDPVTPSCGHSYCMNCIESFWDGEDQKGIHSCPQCRKT
FISRPVLEKNIMLADLIEELKKTGLQAAPADLRYAGHEDVACDFCTGRKLKAIKTCLVCL
ASYCEKHLQPHYDSDTFKKHKLVEPSKNLQENICSKHDEVMKMFCRTDQKCICYLCSVDE
HKGHDTVSAAAERTERQRELEERRGNIQQRIQDREKDVKLLQQEVEAINHSADKTVEDSE
KIFTELIRLLQKRSSDVKQQIRSQQETEVSRVKDVQEKLEQEITELKRKDAELEQLSHTE
DHNQFLLNYPSLPALSESTHSSSINIRPLRHFEDVAAAVSELRDKLQDILRDSWTNISLM
VTKVDVLLSESESEPEPKSRAGFLKYSCEITLDPNTAQTHLKLSEGNRKVVLMDQHQSYS
SHPDRFTHYYQVLSRESLTGCCYWEVEWSGGGVFIAVAYKKISRAEGGHNCGFGNTDKSW
ALNCFQFGYQLVHNSIWTNISGPVSSRVGVYLDHRAGILSFYRVSETMTLIHRVQTRFTE
PLLAGVYVYHIGGSAEFCKLV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcaagaaaatcagcctgaccgactaaaattctcctgttcgatctgtctggat
ctactgaaggatccagtgactccttcctgtggacacagttactgtatgaactgtattgaa
agcttctgggatggagaagatcagaaaggaatccacagctgccctcagtgcaggaaaacc
ttcatatcaaggcctgtgctggagaaaaacatcatgcttgctgatttaatagaagaactg
aagaagactggactccaagctgctcctgctgatctccgctatgctggacatgaagatgtg
gcctgtgatttctgcactggaagaaaactgaaagccatcaagacctgtttagtctgtctg
gcctcttactgtgagaaacaccttcagcctcattatgattcagacacatttaagaaacac
aagctggtggagccgtccaagaacctccaggagaacatctgctctaagcatgatgaggtg
atgaagatgttttgccgcactgatcagaagtgtatttgttatctctgctctgtggatgaa
cataaaggtcatgacacagtgtcagctgcagcagaaaggactgagaggcagagagagctg
gaggagagacgaggaaacatccagcagagaatccaggacagagagaaagatgtgaagctg
cttcaacaggaggtggaggccatcaatcactctgctgataaaacagtggaggacagtgag
aagatcttcactgagctgatccgtctcctccagaaaagaagctctgatgtgaagcagcag
atcagatcccagcaggaaactgaagtgagtcgagtcaaagatgttcaggagaagctggag
caggagatcactgagctgaagaggaaagacgctgagctggagcagctctcacacacagag
gatcacaaccagtttctcctcaactacccctcactgccagcactcagtgagtctacacac
tcatccagcatcaacatccgtcctctgagacactttgaggacgtggcagcagctgtgtca
gagctcagagacaaactacaggacatcctgagagactcatggacaaacatctcactgatg
gtcactaaggtggatgttctactgtcagaatcagaatcagaaccagaaccaaagagcaga
gctggattcttaaaatattcttgtgaaatcactttggatccaaacacagcacaaacacac
ctgaaactatcagaagggaacaggaaggtggtattgatggatcaacatcagtcttattcc
agtcatccagacagattcactcattactatcaggttctgagtagagagagtctgactgga
tgttgttactgggaggtggagtggagcggaggaggagttttcatagcagttgcatacaag
aaaatcagcagagcagaaggtggacataattgtggatttggaaatactgacaaatcttgg
gcattaaattgtttccaatttggttatcagttggttcacaacagcatctggaccaacatc
tcaggtccagtttcctccagagtgggagtgtacctggatcacagagcaggtattctgtcc
ttctatagagtctctgaaaccatgactctgatccacagagtccagaccagattcactgag
ccgctgctggctggagtttatgtttatcacattggaggctctgcagagttctgtaaactc
gtataa
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