Xiphophorus couchianus (Monterrey platyfish): 114146430
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Entry
114146430 CDS
T05908
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114146430 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
114146430 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114146430 (thoc1)
03041 Spliceosome [BR:
xco03041
]
114146430 (thoc1)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
114146430 (thoc1)
Spliceosome [BR:
xco03041
]
Complex C
Other components
EJC/TREX
114146430 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114146430 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
114146430
NCBI-ProteinID:
XP_027876244
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All DBs
Position
6:18220951..18227775
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AA seq
654 aa
AA seq
DB search
MSPPAFNFVDVKEKFTAAARQALSGKTCKHLITVFNPISGNEAEKKTTLDQALRGVLGDQ
IIEQKTSCDDYLSLIYLSIDAVTEGICSATIPFVLLGDVLDCLPLDLCDKIFSFVEKNVS
TWKSSSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKQTDEKEDTMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWTL
QDYFRNPLQCYDKFSWMTFLKFSDETLAVFKSFKLDDMQASKRKMEDLRASAGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSAWIEETTKLV
YQLLSETPPEGEKFATMVEHILSTEENWNSWKNEGCPSFVKERTSDDKPKRPTRKRQAPE
DFLGKGPERKIFMGNDELTRLWNLNQDNMEACKSESREFMPSLDEFFAEAIEQADPVNMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEEDDDDNGDNLLKDSNDSPSIQSKTVTNHQMDDIAAKLGSQWKTLASHLEMKAAE
MREIETDSEDVDVQAKLLLVAWQEREGSQATVENLAMALSSAGFSQLAERLSEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccccgcattcaattttgtcgatgtaaaggagaaatttacggctgctgccaga
caggcactctcgggtaaaacctgcaaacatctaatcactgtgtttaacccgatctccgga
aatgaggcagaaaagaagaccacacttgaccaggccctccggggtgttctcggtgatcaa
attattgagcagaagacgagctgtgacgactatctgtctctcatctacctgagtattgat
gcggttactgagggaatctgctctgccacaatcccattcgtcctgctgggagatgtattg
gactgccttccccttgacctgtgtgacaaaatattctcctttgttgagaaaaatgtctcc
acctggaaatcgagctcattctacaccgcaggaaagaactatctgctgagaatgtgcaac
gatcttctaaggaggctgtccaaatcccagaatactgtattctgtgggcgaatccagctt
ttcctggcacgactcttccctctatctgagaaatctggtctgaatctacagagtcaattt
aatctggacaacataacagtgttcaacaagaatgagcaggagagcactcttggccagaag
cagacagatgaaaaggaagacaccatggaggtggaggaaggtgaaatgggggaggatgac
gcacctgcgccctgttctatcccaattgattacaacctatacagaaagttctggacgttg
caggactacttcagaaatccgctgcagtgctacgacaaattctcatggatgacattcctt
aagttttcagacgagacccttgcagtattcaagagcttcaagctggatgacatgcaggcc
tctaaaagaaagatggaggacctcagagcctctgctggcgaacatgtttattttgccaaa
ttcctcacaagtgagaagctgatggacttgcagctcagcgacagcaacttcagaaggcat
atactgctgcaatacctgatcctcttccagtacctgaagggacaggttaaattcaaaagc
tccagctgtgttctgaatgacgaccagagtgcctggattgaggagacgacaaagctagtt
tatcagctgctgagcgaaacgcctcctgaaggagaaaaattcgccaccatggtcgagcac
attctcagcacggaggaaaactggaactcctggaagaacgagggctgtccgagctttgtg
aaagaaagaacatctgatgacaaacctaaaaggcccaccaggaaaagacaagctccagag
gacttccttggaaaagggccagagcgcaagattttcatgggcaatgatgaattgactcga
ctgtggaacttgaaccaggacaacatggaggcctgcaagtctgaaagcagagagtttatg
ccatcactggacgagttctttgcagaagccattgagcaggccgatccagtcaacatggtg
gaggaggaatataaggttgtgcgtaacccaaactacggatggcgggctttgaggctcctg
tccaggaggagtccacacttctttcagccaacaaaccagaagttcaaaagcctggcagac
tatctagacagcatggtcagcaaactggccaaagagctgccgaaggatatcccttcagaa
gaaatcaagacaggagaggaggatgatgacgataatggagacaatcttcttaaagacagc
aatgacagtccgagcatccagagtaaaactgtaacaaaccatcagatggacgacattgca
gccaaactggggtcccagtggaagacgctagcgtctcatctggagatgaaggcagcagag
atgcgggagattgagacggacagcgaagatgtagatgtacaggccaagctgctgctggtg
gcctggcaggagcgagaggggtcccaagcaacagtggagaacctggcaatggctctcagc
tcggcagggttctcccagcttgcagaacgcctcagtgaggcttga
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