Xiphophorus couchianus (Monterrey platyfish): 114153170
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Entry
114153170 CDS
T05908
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114153170
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114153170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
zf-RING_6
Prok-RING_4
zf-RING_10
DivIVA
DUF4407
PI3K_P85_iSH2
LMBR1
ALS2CR8
DUF5446
Motif
Other DBs
NCBI-GeneID:
114153170
NCBI-ProteinID:
XP_027887337
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All DBs
Position
11:25285065..25290757
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AA seq
577 aa
AA seq
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MADHTSPDYFSCSLCQSLLRDPVAIPCGHSFCMDCIDGYWNEADYTGIYICPQCKITFTQ
RPVLRPNATLTMVAEKIKKSGLNVNLSVSQANIYAGTNDVPCDFCTGKKLKAVKSCLNCL
ASYCEKHLRPHYESATFKRHKLVDELGNLDRKICPQHQKSLELFCRTDQMCICAICTVSE
HRGHDIVSAEAERGEKQKLLGVSQAEIRQKCQERVKELEELKTAVDSLKNSAQRAMVESQ
KMFEDMIRSIERMRSEVTKLIGINEKAAFNQAEALIERLEQEIDELKKKETGLKQLYSTE
DHIHFLQNFNYLCTPTDDGFIPKVTVNPDFSFAAVRKAVGEIKERLEEFGREELLKISKT
VNEVPIYTTESRTLDRRSRGKEMKMTVDNTPPPEPKTKADFIKYFCQLKLDPITAYKELY
ISEGSRKVIRTRDLQPYSDSPERFDSFAQVLCREALSGGRFYWEIEWSGEFSIGVAYRSI
SRKGKGSLCLLGYNDKSWSLLCSDTGYSAWHNRVDKAVNGPHSPRIGVYLDHTAGVLAFY
SIGNSSMTLLHRFQTTFVEPVYPGFGVGTSVKICNVK
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccacacgtctcctgattatttcagctgctccctgtgtcagagtctcctcagg
gaccccgtggccatcccctgtggccacagcttttgcatggactgcatcgacggctactgg
aacgaagcggactacaccgggatctacatctgtccccagtgcaagatcacgttcacccag
aggcccgtgctgcgacccaatgccaccctcaccatggtggccgagaagatcaagaagagc
ggcctgaatgtcaacttgagcgtgtcacaggcgaatatctatgcggggaccaacgacgtg
ccctgcgacttctgcacagggaagaaactcaaggcagttaagtcgtgcctgaattgcctg
gcgtcgtactgcgagaagcacctgaggccgcactacgagtcggccacattcaagaggcac
aagctggtggacgagctggggaacctagacaggaagatctgcccgcaacaccagaagtcc
ctggagctcttctgccggacggaccagatgtgcatctgtgccatctgcaccgtcagcgaa
cacagaggccatgacatcgtgtccgccgaggcagagaggggcgagaagcagaaactgttg
ggtgtttcccaagctgagattaggcaaaaatgccaggaaagggtaaaggagctagaggaa
ctcaagactgctgtggattcacttaagaactcagcccagagagcaatggtggagagccag
aagatgtttgaggacatgattcgctccattgagaggatgaggtcggaggtgaccaagctg
atcggcatcaacgagaaggcggctttcaaccaggccgaagctttgatcgagcgactggag
caggagatcgacgagctcaagaagaaggagaccggcctcaagcagctctacagcaccgaa
gaccacatccattttctgcagaactttaactacctgtgcacgccgaccgacgatggcttc
attcccaaggtgaccgtcaaccccgacttctcctttgccgccgtcaggaaggctgtgggg
gagataaaagagcgcctcgaggaattcggcagggaggagctgctcaaaatttccaaaaca
gtgaatgaagtcccaatctacacgacggagagccggacattggacagaaggagcagaggt
aaagaaatgaaaatgacggtggacaatactcctcctccagagccaaagaccaaagccgat
tttatcaaatacttctgccagctgaagctggaccccatcaccgcctacaaagagctctac
atctccgagggcagcagaaaggtcatccgcaccagagacctgcagccctacagcgacagc
cctgagaggtttgacagcttcgcccaggtactgtgccgcgaggccctgtctggcggtcgc
ttctactgggaaattgagtggagcggggagttctccatcggtgtggcctacaggagcatc
agccggaagggcaagggctcgctgtgcctgctgggatacaacgacaagtcctggagcctc
ctctgctccgacacgggatactccgcctggcacaaccgggtggacaaagccgtcaacggg
ccgcactcacccaggataggcgtgtacctggaccatacggcgggggtgctggcgttttac
agcataggcaacagctccatgacgctcctgcacaggtttcagaccacgtttgtcgagccc
gtctatccgggcttcggagtcggaacgtctgtgaagatctgcaacgtcaaatga
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