Xiphophorus couchianus (Monterrey platyfish): 114155637
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Entry
114155637 CDS
T05908
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114155637 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114155637 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114155637 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114155637 (col1a2)
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114155637 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
114155637
NCBI-ProteinID:
XP_027891419
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Position
13:complement(9367971..9387196)
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AA seq
1351 aa
AA seq
DB search
MLSFVDTRILLLLAVTLYLTSCQSGPRGDKGPRGDRGFPGPNGKDGKPGLPGPAGPPGPP
GLGGNFAAQYDGSKAPDPGPGPPGLMGPRGSPGMPGPQGPQGQTGHAGEPGQPGNDGPVG
ARGPPGPPGKSGEDGNNGRPGKPGDRGAAGPQGARGFPGTPGLPGMKGHRGYTGIDGRKG
EPGSAGAKGESGASGSPGSSGLAGQRGQPGERGRPGPAGPAGSRGSDGNVGPSGPAGPLG
AAGPPGFPGGPGPKGELGAAGGTGPSGPQGSRGEPGSNGVVGPIGPPGNPGANGLNGAKG
AAGTPGSGGAPGFPGPRGGPGPQGPQGAAGPRGLSGDPGPQGVKGDTGGKGEPGNAGPQG
PPGTQGEEGKRGPTGEIGANGPAGSRGARGAPGSRGLPGSDGRTGPIGMPGARGASGAAG
PRGPPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPSGPAGQDGRSGPPGPTGPRGQPG
NIGFPGPKGPSGEPGKPGEKGPSGPTGLRGPPGPDGNNGATGPMGAAGGAGEKGEQGPAG
APGFQGLPGPAGSVGEAGKPGERGIPGEQGAAGPAGGKGERGNPGAAGASGAQGPIGPRG
PAGAPGPDGGKGEPGAAGAAGAAGHQGSAGIPGERGVAGGPGGKGEKGETGHRGPDGNSG
RDGSRGPAGPPGPPGPTGANGDKGEVGSFGPSGPAGPRGPSGERGEVGPAGSPGFAGPPG
LDGQAGARGERGPAGGKGESGSAGPAGPAGQSGPAGPAGSAGPPGARGETGPPGLTGLPG
AAGRVGAPGPAGIVGPPGPSGNAGKDGPRGLRGDSGPAGPSGEQGMVGPPGPPGEKGPSG
ESGPAGLSGAPGPTGPLGITGFVGLPGARGDRGTPGGAGAVGEPGRPGPAGPSGARGPPG
NIGMPGMTGPQGEAGREGSPGNDGPPGRPGASGFKGDRGEPGSPGALGLAGAPGPAGPTG
AAGRPGNRGEAGPSGPSGPAGPAGARGAPGPSGPRGEKGVAGEKGDRGMKGLRGHPGLQG
MPGPSGPPGESGPAGALGHAGPRGPSGPNGPPGKDGRAGTHGPMGPPGSRGPPGYVGPVG
PAGSPGLPGPPGPSGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIDNLLTPEGS
RKNPARTCRDIKLSHPDWSSGFYWIDPNQGCINDAIKVFCDFTTRETCIYAHPESIARKN
WYRSTDNRKHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKNS
VAYMDGESGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTTHTGEWSKTVIEYRTNK
PTRLPILDIAPLDIGGPDQEFGLDIGPVCFK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatactcggattctgttgctgcttgcagtaacgttatatctaaca
tcatgccaatcgggtcccagaggagacaaaggacctcgaggtgacaggggttttcctggc
cctaatggaaaagatggcaaacccggactgcctggccccgctggccctccaggcccccct
ggactcggaggaaactttgctgctcaatatgatggttcgaaagcccccgatcctggaccc
ggacccccaggactgatgggacccagaggttcccctggaatgcctggaccccagggacct
caaggacagactggacacgctggtgaacccggacagcctggaaacgacggccctgttgga
gcccgtggaccccctggaccacctggcaaatctggagaagatggaaacaatggcagacct
ggcaagcccggagacagaggtgccgccggccctcagggtgctcgtggattcccaggaact
cctggacttccagggatgaagggacacagaggttacactggtattgatggacgtaaggga
gaacccggttctgctggcgccaagggtgagtctggtgcctctggatctcctggaagttct
ggactggctggacaacgtggtcagcccggtgagagaggtcgccccggccctgctggtcct
gctggttctcgtggttctgatggcaatgttggaccttctggcccagctggtcctttgggt
gctgctggccccccaggcttcccaggcggtcctggacccaagggagaacttggagcagct
ggaggcactggcccatctggacctcagggatctagaggagagcccggatccaacggtgtt
gttggcccaattggcccccctggcaaccctggtgctaatggtctgaatggagccaaggga
gctgctggaacccccggttctggtggagctcctggtttccccggaccaagaggaggacct
ggacctcagggacctcagggtgctgctggaccaagaggactttctggtgatcctggtcct
cagggtgtcaagggagacactggtggcaaaggagagcctggtaacgctggccctcaggga
cctcctggaactcaaggtgaggagggcaagagaggacccactggtgagattggtgctaat
gggcctgctggcagccgtggtgctagaggtgctcccggaagccgtggtctgcctggttcc
gatggaagaactggcccaattggtatgcctggtgcccgtggtgcttctggtgctgctgga
cctcgtggaccccctggagatgccggtcgtgctggcgagcctggccctgccggtctcaga
ggtctcccaggaagccctggaagctctggacccccaggaaaggagggaccttctggtcct
gctggacaagatggccgttctggacctcccggcccaactggacctagaggccagccagga
aacattggtttccctggacccaaaggaccctctggagagccgggcaaacctggagagaag
ggacctagtggccccactggtctgagaggaccccctggacctgacggcaacaacggagcc
actggccccatgggagctgctggcggtgctggtgagaagggagagcagggaccagctgga
gctcctggcttccagggtctgcctggacctgctggatctgtcggtgaggctggcaagcct
ggagaaagaggtatcccaggagagcagggagccgctggaccagctggtggcaagggagag
cgtggtaacccaggtgctgctggcgcttctggagctcagggaccaattggaccccgtgga
ccagctggagcccctggacctgatggtggcaagggagagccaggagctgctggagctgct
ggggctgccggacatcaaggatctgctggcatccccggtgagcgtggtgtagctggtggt
ccaggaggcaagggagagaagggagagaccggacacagaggccctgatggaaattctggc
agagatggctctcgtggccctgctggacctcctggccctcctggacccactggagccaac
ggtgataagggtgaggttggttcctttggaccctctggccctgctggacctcgtggaccc
tctggtgagcgtggagaggttggacctgccggatcccccggatttgctggaccccctggt
cttgatggtcaggccggagccagaggagagcgtggacctgccgggggaaagggagagtct
ggatccgctggccctgctggacccgctggacagtctggacctgctggcccagctggctct
gctggacctcctggcgctcgtggagaaactggtcctccaggtctgactggtttgcctggt
gctgctggcagagttggtgctcctggccctgctggtattgtgggacctcctggcccctcc
ggtaacgctggaaaagacggacctcgtggtctccgtggtgactctggtcctgctggtcct
tctggtgagcaaggaatggttggaccacctggtcctcctggagagaagggaccctccgga
gagtctggccccgctggactttctggtgctcctggacccactggccctctgggaattaca
ggattcgttggtctgcctggtgctagaggagatcgtggtacacctggtggtgctggtgct
gtgggagagcctggtagacctggacccgctggtccatctggagcccgtggtccccctggt
aacattggcatgcctggtatgaccggacctcaaggagaggctggacgcgagggtagcccc
ggtaacgacggaccccctggtcgtcccggtgcctctggattcaagggagatcgtggtgag
cctggatctcctggtgccttgggacttgctggtgctcccggacctgccggaccaactgga
gctgctggtagacctggaaaccgtggagaggctggcccatcaggtccttctggacccgct
ggacctgctggagccagaggcgctccaggaccttctggaccccgtggtgagaagggagtt
gctggagagaagggagacagaggcatgaagggtcttcgtggacatcctggtctccaggga
atgcccggaccttcaggacctcctggtgagagcggtcctgctggagcccttggacatgct
ggacccagaggaccttctggacccaatggaccccctggtaaagatggtagagctggcaca
catggtcctatgggtcctcctggctcccgtggacctcctggatatgttggaccagttggc
cctgctggatctcctggtctgcccggacctcctggcccatctggtggcggatacgacgtc
tccggatacgatgaatacagagctgatcagccagctctcagagccaaggactacgaagtt
gatgccaccatcaagtctctcaacactcagattgacaacctgcttacccccgagggatcc
agaaagaaccctgcccgcacctgccgcgacatcaagctcagtcaccccgactggagcagc
ggattctactggattgaccccaaccagggctgcatcaatgatgccatcaaggtcttctgc
gactttaccacccgcgagacctgcatctatgcccatccagagagcattgcacgcaagaac
tggtacagaagcacagacaacaggaagcacgtgtggttcggagagaccatcaacggcggt
accgagtttacctacaacgacgagaccctcagcccacagagcatggccacgcagctggct
ttcatgcgcctgctttccaaccaggctagccagaacatcacctaccactgcaagaacagc
gttgcctacatggatggtgagagcggcaacctgaagaaggccgttgtgctccagggctcc
aatgacgtggagctcagggccgagggcaacagccgcttcaccttctccgtgctggaggat
ggctgcactacacacactggtgagtggagcaagacagtgattgagtacagaacaaataaa
ccaactcgcctccccatcctcgacattgcacctttggacattggtggacctgatcaggag
tttggtttggacattggcccagtctgtttcaaataa
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