Xiphophorus couchianus (Monterrey platyfish): 114160236
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Entry
114160236 CDS
T05908
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114160236 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114160236 (ddx42)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114160236 (ddx42)
Spliceosome [BR:
xco03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114160236 (ddx42)
Complex B
114160236 (ddx42)
Complex C
U2 SnRNP specific factors
114160236 (ddx42)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
114160236
NCBI-ProteinID:
XP_027898518
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All DBs
Position
16:complement(4422210..4432397)
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AA seq
901 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEDVPPNVPPKSHTSFGASGSSGGYGKSPQLPSFYK
IGSKRANFDEENAYFEDDEEESSSNADLPYIPAENSPTRQQMKSGGGSDSEDDPLDAFMA
EVENQAAKDMRKLEEKEKKSTKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDY
DSDGNPIPSTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSILNGSQVLELRQKLNLR
VSGAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEPGEGPLAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SVASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLLSGS
DKWNWLTRRLVEFTSTGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TSKDTSFAGDLVRNLEGANQAVPKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYKE
RPGLGSESSERSSSLSSASSFEGYSKPTTGAMGDRMSALKQAFQAQYKSHFVAATSGPPK
LSTKSSSSSCWTSAGSLNSVPTEAANGSERPNMAAFSMPGFTSAGSLSTVPANPTGSQHS
SSPPAPPTHRETPRDRHGDSQGRPGDGHHRHSDRSDRHSGEDRYGDRDRHGDRDRDRHGD
RDRHSSRHSDSRNGDGSRRERDDRRGDRDGGDRGSGEGRDRGDDSFAVPDPPKRRKSRWD
N
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggcggtccaggagtgaagcgtgggtttggttttggaggtttttcc
cttgcagggaagaaagaggatgttccccctaatgttcccccaaaatctcacacatcattt
ggcgcttctggatcaagtggcggttatgggaaaagcccacagcttccgtctttctacaaa
atagggtccaaaagagctaattttgatgaagaaaacgcgtatttcgaagacgatgaagaa
gagtccagcagcaacgccgatctgccctacattcctgctgagaactcgcccacgcggcag
cagatgaagtcgggcggcggctcagacagcgaagacgacccgttggatgccttcatggca
gaggttgagaaccaagccgctaaagacatgaggaaactagaagaaaaggagaaaaaatca
accaagggtattcgtgatgacattgaggaagaagatgagcaagaagcgtatttccgctac
atggcagagaatcccacagcagggctgacccaggaggaagaggaggaaaacatcgactat
gacagtgatggaaacccaattccttctacaaccaagaaaataatcttgccgctgccacca
attgatcactcagagatcgactacccaccttttgagaaaaacttttacaatgaacacgag
gagctaagcattctcaatggcagccaagtgttggagttgaggcagaaactcaacttgaga
gtttctggtgctgcccctcctaaaccttgcaccagctttgctcacttcggcttcgatgag
cagctgatgcatcagattcgaaagtctgagtacactcagcccacgccgatccagtgtcag
ggagttcccattgctctttctggacgcgacatgatcggcattgcaaaaacaggaagtggt
aaaacagcggcattcatctggccgatgctggttcacatcatggaccagaaggagctggag
ccgggagagggacctttagcggtcatcgtgtgtcccaccagggagctctgtcagcagatc
catgcagagtgcaagcgttttgggaaagcgtactcgctgcgttctgtggctgtttacgga
ggcggcagcatgtgggagcaggccaaggctctgcaggagggagcagagatcgtcgtgtgc
acgccgggtcgcctgattgaccatgttaaaaaaaaggccacatccttacagagagtgaca
tatctggtgtttgatgaagctgatcgcatgtttgatatgggatttgaatatcaggtgaga
tcagttgcaagccatgttcgtccagacaggcagactcttctcttcagcgctacttttcgg
aaaaaaatcgagaggttggcgagggacattttagttgatcctattcgggttgtgcaaggc
gacatcggagaggccaacgaggatgtgactcaggtggtggagctgctgctcagcggatca
gataaatggaactggctgacccgaaggctggtcgagttcacttccaccggctctgtgctc
attttcgtcaccaagaaggccaactctgaggagttggccactaacctgactcaggagggc
tacagcctcggcctcctgcacggagacatggaccagagcgagaggaacaaagtcatcagc
gacttcaagaagaaaaatttacccgttctggttgccactgatgtagccgcccgtggtctg
gacatcccgtcaattcgcaccgtggtgaactacgatgtggcgcgcgacatcgacacgcac
actcacagaatcggccgaacgggtcgtgccggggagaaaggtgttgcttacacccttctg
accagcaaagacacttcctttgccggcgacttggtgcgaaacctggagggagccaatcag
gccgttcccaaagagctcatggatttagccatgcagaatccctggttcaggaaatcgcgg
tttaagggaggtaaaggaaagaagctgaacatcggtggaggcggtcttggttacaaagag
agaccgggtctggggtccgagagctctgaacgtagcagcagcttgtcttctgctagtagc
tttgaaggctacagcaaaccgacaactggggcgatgggggaccgcatgtctgcactgaaa
caagctttccaggctcagtataagagccattttgtggcggcaaccagcggccctccgaag
ctcagcaccaagtccagcagctcctcctgttggaccagcgccggcagcctgaactctgtg
ccaacagaggccgccaacggctcagagcgacccaacatggccgccttttcaatgcctggt
ttcaccagcgccggctccctgagtaccgtgcccgccaatccaactggctcacagcacagc
agctctccacccgcacccccgacacacagagagaccccgcgggaccgacacggggattcc
cagggtcgtcccggcgacggccatcaccgccacagcgacaggagcgaccggcatagcggc
gaggatcgctacggtgaccgggaccgacacggagacagagatcgcgaccgccatggtgac
agggatcgccacagcagccgccacagcgacagccggaatggcgacggaagcagaagagag
agagatgaccggagaggggacagggatggcggagacaggggaagcggggaggggagggac
aggggagacgatagcttcgcagttcccgacccgccgaaacgcagaaagagccgatgggat
aactaa
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