Xanthomonas campestris pv. vesicatoria: XCV2612
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Entry
XCV2612 CDS
T00288
Symbol
lig3
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xcv
Xanthomonas campestris pv. vesicatoria
Pathway
xcv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XCV2612 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcv03400
]
XCV2612 (lig3)
Enzymes [BR:
xcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XCV2612 (lig3)
DNA repair and recombination proteins [BR:
xcv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XCV2612 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAJ24289
UniProt:
Q3BSC0
LinkDB
All DBs
Position
complement(2945662..2948280)
Genome browser
AA seq
872 aa
AA seq
DB search
MSLSEYRRKRSFNKTREPEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKDDDAYAVTLEADDLLADVAAAPAEDV
RRAGAGKTQRKALTTVPPLAAKRRGTWAKQALALSNARRAQMEDAPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTDGNVRLWSRNALEWTDKTPEIADAIRSLGLRSAQLDGELI
AGRGTKDDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKRLLQQVLEAAPH
THLAYSSHVEGDGTEAFRVAGQQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTPQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGPATPS
SARRSATTRAAKDAATQVPKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAQPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDGIRQNLARWAEQDQD
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgaatatcgccgcaagcgcagcttcaacaagacccgcgagccggagccg
ggcaaggccctgccgccggggcagcgtgcgatcttcgtggtgcaactgcaccacgccagc
cgccgccattacgactttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggcccagttacgaccccaaggtcaagcgcatggcagtggaggtggaagaccacccg
gtcgattacgccagtttcgagggcgagattcccaaaggcgaatacggcggcgggcatgtg
gcgcagttcgatcatggcgtatgggccaccgcgggcgaccccgaagcgcagttggccaag
ggacatctgcgctttgagttgttcggcaacaagctcaagggcggctggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaggacgacgatgcctacgcc
gtcacgttggaggccgatgacctgctggccgacgtcgctgccgcgcctgccgaggatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcgctgacgaccgtaccgccgctggcg
gcgaagaggcgtggtacctgggcaaaacaggcgctggcgctgagcaacgcacgtcgcgcc
cagatggaagatgccccgttcgcaccacagctggccaagctggggcagtccccgccagaa
ggagcgcaatggctgcatgaaatcaaatgggacggttatcgcatcctggccactgtgacc
gacggcaatgtgaggctatggtcgcgcaatgcattggaatggaccgacaagacgccggaa
attgccgatgccatccggtcgctgggcctgcgcagcgcgcagctcgatggcgaactgatc
gccggacgcggcaccaaggacgacttcaacctgctgcaggccaccttgtccggcgaacgc
caggtgccgctggcgctggcggtattcgacctgctgcatgtggacggggtggacatcagc
gaggcgccgctgcgcgaacgcaagcggctgttgcagcaggtgctggaggctgcacctcac
acgcatctggcctatagctcgcacgtcgaaggcgatggcaccgaggcattccgggtggcc
gggcaacagcacttcgaaggcatcatttccaagcgcgcagatcgcccgtatcgcgatggg
cgtagcgacgattggcgcaagaccaagcaactggccagccaggagtatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggcttcggctcgctgttgctggccacgccggac
ccggtgcatggctggttgtacgtgggccgtgtgggctccgggttctccgatgccttgatg
cgcgaggtcaccccgcaactggaaggtggcgggcgcaaacccaccgcgcatattcccacc
gaagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgcggcattggtgggcaacagttgttgcgccaggcatcgttcaaggcgctgcgcccg
gataagcgcattgccgatctggccgacagcgatgccggaaatggcccggctacaccgtcc
tctgccaggcgttcggcaacaacgcgtgctgccaaagacgcagcaacgcaggtgcccaaa
cgtgcagcgacgcgggcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatccgcgcgacc
aagggcgatgtctgggactattaccaggcggtgatggaccacctgttgccgcagatcgtg
ggacggccgctgtccatcatccgctgccccagcggcgcggaaaaaccgtgttttttccag
aagcaccatactgccggcctcgagcgtgtgagctcggtcaagctgaccgaagagaccgga
accaacgcgtattacctggtggtcgaagacgcgcctggcctgctggaactggtgcaattc
aatgcgttggaattccacccctggggctcgcatgcggaccgcccggacgtggccgaccgg
gtggtcttcgatctcgatccgggcccggacgtgccgtttgccgaggtcaaacgcgcggcc
aacgatattcgcaagctgctggcgcagcttgagctggaatcgttcctgcgtgtgtctggc
ggcaaggggctgcacgtggtggtgcccctaaaccccggctgcgattgggaggtgaccaag
cgtttcgccaagggatttgccgatgccctggcgcaggcgcagccgcagcggttcatcgcc
actgccaccaagcggctgcgcaacaagcgcatcttcgtggactacctgcgcaacggccgt
ggcgccactgcggttgcgtcctattcgttacgcggccgcccgggggcgccagtcgcgttg
ccgctggcgtggtcggacctgtccaagctgcagcgcgccgatgcattcaccttgcgcgat
gtcccggagaagctgcgccgtcggcgcaaggacccctgggcagacatggacggcatccgg
caaaacctggcgcgctgggcagaacaggaccaggactga
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